Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0448.Seq
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.4  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.4  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   4.2  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   9.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   9.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.6  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 716 YKNYMETLTFWDYELDFP 663
           Y N   T+ ++DY  DFP
Sbjct: 288 YTNLSMTMKYYDYGADFP 305


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 716 YKNYMETLTFWDYELDFP 663
           Y N   T+ ++DY  DFP
Sbjct: 288 YTNLSMTMKYYDYGADFP 305


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 743 LLNINYFTLYKNYMETLTFWDYEL 672
           LLNI Y+ +Y  Y E   + D  L
Sbjct: 482 LLNICYWVIYVTYQEEFKWQDSPL 505


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 770 NEFFDIY*MLLNINYFTLYKNYM 702
           N + + Y    N NY  LYKNY+
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYI 121


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 770 NEFFDIY*MLLNINYFTLYKNYM 702
           N + + Y    N NY  LYKNY+
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYI 121


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 161 SSFSLVVLGTFPLIVMFLLAISFAIRILCL 72
           +S ++ +LGT+   +MF++A S    IL L
Sbjct: 287 TSDAVPLLGTYFNCIMFMVASSVVSTILIL 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 212,645
Number of Sequences: 438
Number of extensions: 4820
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)