Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0447.Seq
         (505 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasm...    24   2.5  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           24   2.5  
DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protei...    23   5.9  
DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protei...    23   5.9  
AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    23   5.9  
AF457560-1|AAL68790.1|   56|Anopheles gambiae hypothetical prote...    23   7.8  

>DQ518576-1|ABF66618.1|  276|Anopheles gambiae putative cytoplasmic
           carbonic anhydrase protein.
          Length = 276

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
 Frame = +1

Query: 352 HMGCVNCL--EWNADGSVLASASDDLHVILWDPYRYKQLHNIATGH 483
           H GC +    E   DG   A    +LH++ W+  +YK     A GH
Sbjct: 97  HWGCSDSRGSEHTVDGESFAG---ELHLVHWNQSKYKSFAE-AAGH 138


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = +1

Query: 343 LQGHMGCVNCLEWNADGSVLASASDDLHVILWDPY 447
           L+GH   V  ++WN     LAS      + +W  Y
Sbjct: 60  LRGHRSDVILVKWNEPYQKLASCDSSGIIFVWIKY 94


>DQ230894-1|ABD94313.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 325 VCRSYSSSPLIGFGTACR 272
           +C+ Y  +   GFG +C+
Sbjct: 180 ICKDYKETGYCGFGDSCK 197


>DQ230893-1|ABD94311.1|  315|Anopheles gambiae zinc finger protein
           183 protein.
          Length = 315

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 325 VCRSYSSSPLIGFGTACR 272
           +C+ Y  +   GFG +C+
Sbjct: 180 ICKDYKETGYCGFGDSCK 197


>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.0 bits (47), Expect = 5.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 302 TINRFWNCLSMSPRSR 255
           T +  W CL+M+P SR
Sbjct: 672 TFSTLWFCLAMNPLSR 687


>AF457560-1|AAL68790.1|   56|Anopheles gambiae hypothetical protein
           13 protein.
          Length = 56

 Score = 22.6 bits (46), Expect = 7.8
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 466 CVAACNGTGPIK*HADHLMPMRELIHQHSTL 374
           C+ +  G   I+      +P+R+LI QH+ L
Sbjct: 16  CLVSVQGNEIIQNVVKRSIPLRQLILQHNAL 46


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,768
Number of Sequences: 2352
Number of extensions: 9928
Number of successful extensions: 18
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 45245913
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)