Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0444.Seq
         (669 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.49 
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    23   3.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   3.5  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    22   4.6  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   4.6  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    22   4.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.49
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +3

Query: 81  AVPSTCPSLPSRM--VSSR*NPPPATPTWEVRTLTIAWSTTLSRSSRGNTKRTSLPT 245
           A  S+C  +P  +  + SR   PPA+ T    T+T   +TT + ++      T+  T
Sbjct: 74  AFSSSCDPVPGNLEQIGSRPLHPPASSTSLPATITTTTTTTTTTTATAAATATTTAT 130


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = -3

Query: 541 PLKKSCRSFCTWGYEWSHPPVQYRGFE 461
           P ++S  + C   + W H P  Y+  E
Sbjct: 458 PTEESVDALCNTLHHWHHCPEIYKAIE 484


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 167 HLPSGCRRRWISPRRYHP 114
           H P+G  + WI+  RY P
Sbjct: 794 HTPNGIVKTWIAHDRYLP 811


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 209 FKRKYKKDLATNKRALGVCVLHVR-RQRGPYHRTHK 313
           FKR  +KDL+   R    C++  R R R  Y R  K
Sbjct: 134 FKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 490 GSTRIPRCRSSCKISLM 540
           GSTR P  R+SC+  +M
Sbjct: 399 GSTRRPSRRNSCESQMM 415


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +2

Query: 209 FKRKYKKDLATNKRALGVCVLHVR-RQRGPYHRTHK 313
           FKR  +KDL+   R    C++  R R R  Y R  K
Sbjct: 134 FKRTVRKDLSYACREEKSCIIDKRQRNRCQYCRYQK 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,167
Number of Sequences: 438
Number of extensions: 4577
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)