Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0443.Seq
         (784 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   2.1  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 712 PTVTM-TVSTLCGQ*ADYPQVTPPLT 638
           P V++ T S LCG    +PQ T P+T
Sbjct: 75  PVVSLSTCSMLCGSTQLWPQPTGPVT 100


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 228 SYIKSSESPDESSL*TVNMYSIQLRTV 148
           +Y   + S DESS  T N+Y    RTV
Sbjct: 10  TYSDDNFSDDESSPLTENIYGGSTRTV 36


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 228 SYIKSSESPDESSL*TVNMYSIQLRTV 148
           +Y   + S DESS  T N+Y    RTV
Sbjct: 10  TYSDDNFSDDESSPLTENIYGGSTRTV 36


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 228 SYIKSSESPDESSL*TVNMYSIQLRTV 148
           +Y   + S DESS  T N+Y    RTV
Sbjct: 10  TYSDDNFSDDESSPLTENIYGGSTRTV 36


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 228 SYIKSSESPDESSL*TVNMYSIQLRTV 148
           +Y   + S DESS  T N+Y    RTV
Sbjct: 10  TYSDDNFSDDESSPLTENIYGGSTRTV 36


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 718  QQPTVTMTVSTLCGQ*ADYPQVTPPLT 638
            +QP    T +TL  Q      V+PPLT
Sbjct: 1101 EQPPDKATCTTLTAQTIRVSWVSPPLT 1127


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,209
Number of Sequences: 336
Number of extensions: 3524
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21168876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)