Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0443.Seq
         (784 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical pr...    30   2.1  
U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical pr...    29   2.8  

>Z81583-6|CAB04674.1|  397|Caenorhabditis elegans Hypothetical
           protein T02G6.6 protein.
          Length = 397

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +2

Query: 473 LIKSIIMSKGQSQIFSNYNTFRKSMTQRDVRGNTESGVPRRFRLCDLFC 619
           L ++II+ K Q +   NY+TFR   + +    +  + + RR    D+FC
Sbjct: 118 LNRNIILFKKQCKFHFNYSTFRAPFSGKSFHASRLTILRRRRASLDIFC 166


>U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical
           protein T09D3.8 protein.
          Length = 166

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +3

Query: 603 CVICFVNNILIPVSGGVT*G*SAHCPHSVDTVIVTVGCCDQHTNVNTSRNVTVLVLY 773
           C +C +N+IL+P   G+           + T   + GC   +   NTS + T  +LY
Sbjct: 64  CTVCGINDILLPADDGM----KKRPNEWLQTDSTSDGCVQWNVYCNTSPDCTSTILY 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,046
Number of Sequences: 27780
Number of extensions: 311882
Number of successful extensions: 656
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)