Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0443.Seq
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    26   0.45 
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    26   0.45 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   7.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   7.4  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.8  

>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 628 MLFTKQITQTKPSRYSRFSVATYITLGH*FSECIIIGKNLTLPFTHYY 485
           +LFT ++ +   S   ++  + Y  L     E    GKN+T P+ +YY
Sbjct: 131 LLFTIELDRVLESPRGKYEFSKYDKLKKKLEEWT--GKNITTPWDYYY 176


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -1

Query: 628 MLFTKQITQTKPSRYSRFSVATYITLGH*FSECIIIGKNLTLPFTHYY 485
           +LFT ++ +   S   ++  + Y  L     E    GKN+T P+ +YY
Sbjct: 146 LLFTIELDRVLESPRGKYEFSKYDKLKKKLEEWT--GKNITTPWDYYY 191


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 406 NIDFIIYLIVINYFRPCAI 462
           N DFIIY  + +++ PC I
Sbjct: 340 NTDFIIYSSLSSFYIPCII 358


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -1

Query: 622 FTKQITQTKPSRYSRFSVATYITLGH*FSECIIIGKNLTLPFTHYY 485
           FT ++ +   S   ++  + Y  L     E    GKN+T P+ +YY
Sbjct: 36  FTIELDKVLESPRGKYEFSKYDKLKKKLEEWT--GKNITTPWDYYY 79


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 177  NMYSIQLRTVNVAGEKPKFPRLSV 106
            N Y + L + N  G  P  P LSV
Sbjct: 1469 NTYQLYLTSHNKIGSSPSSPVLSV 1492


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 177  NMYSIQLRTVNVAGEKPKFPRLSV 106
            N Y + L + N  G  P  P LSV
Sbjct: 1465 NTYQLYLTSHNKIGSSPSSPVLSV 1488


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +1

Query: 130 FLSGNIDSSKLN 165
           +L G+IDSSK+N
Sbjct: 507 YLYGSIDSSKIN 518


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,439
Number of Sequences: 438
Number of extensions: 3825
Number of successful extensions: 19
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)