Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0441.Seq
(781 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 157 7e-39
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 150 1e-36
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 139 2e-33
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 123 1e-28
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 105 4e-23
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 72 6e-13
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 68 7e-12
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 59 5e-09
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 37 0.021
SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.34
SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.60
SB_26282| Best HMM Match : Tctex-1 (HMM E-Value=3.1e-14) 31 0.79
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039) 30 2.4
SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_8849| Best HMM Match : F-box (HMM E-Value=0.86) 30 2.4
SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.4
SB_25455| Best HMM Match : DUF948 (HMM E-Value=0.11) 28 7.4
SB_5592| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 157 bits (382), Expect = 7e-39
Identities = 76/88 (86%), Positives = 80/88 (90%)
Frame = +2
Query: 509 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 688
SDNQPGVLIQVFEGER+MT NNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSA+
Sbjct: 434 SDNQPGVLIQVFEGERSMTAHNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAV 493
Query: 689 EKSTNKENKITITNDKGRLFQGRDRRMV 772
+KST KENKITITNDKGRL + RMV
Sbjct: 494 DKSTGKENKITITNDKGRLSKEDIERMV 521
Score = 146 bits (354), Expect = 2e-35
Identities = 72/88 (81%), Positives = 80/88 (90%), Gaps = 2/88 (2%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSL 180
RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELN DLF+ T EPVE+++
Sbjct: 262 RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNQDLFKKTTEPVEQAI 321
Query: 181 RDAKM--DKAQIHDIVLVGGSTRIPKVR 258
RD+K+ K IHDIVLVGGSTRIPK++
Sbjct: 322 RDSKIPGGKESIHDIVLVGGSTRIPKIQ 349
Score = 80.2 bits (189), Expect = 2e-15
Identities = 40/74 (54%), Positives = 46/74 (62%)
Frame = +3
Query: 246 PQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGI 425
P+ QK+LQ+ F GKELNKSINPDE ILHGDK + V+D GI
Sbjct: 346 PKIQKMLQELFGGKELNKSINPDEAVAYGAAVQAAILHGDKDDTVKDLLLLDVAPLSMGI 405
Query: 426 ETAGGVMTTLIKRN 467
ETAGGVM+ LIKRN
Sbjct: 406 ETAGGVMSVLIKRN 419
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 150 bits (364), Expect = 1e-36
Identities = 70/88 (79%), Positives = 80/88 (90%)
Frame = +2
Query: 509 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 688
SDNQ VLIQV+EGER++TKDNNLLGKFEL+GIPPAPRGVPQI+VTFD+D+NGILNVSA+
Sbjct: 526 SDNQTSVLIQVYEGERSLTKDNNLLGKFELSGIPPAPRGVPQIDVTFDVDSNGILNVSAV 585
Query: 689 EKSTNKENKITITNDKGRLFQGRDRRMV 772
+KST KENKITITNDKGRL + RMV
Sbjct: 586 DKSTGKENKITITNDKGRLSKEDIERMV 613
Score = 142 bits (344), Expect = 3e-34
Identities = 67/88 (76%), Positives = 83/88 (94%), Gaps = 1/88 (1%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSL 180
RLRTACERAKRTLSSSTQASIEIDSL++GIDFYTSITRARFEE+NA LF+ T+EPVEK++
Sbjct: 355 RLRTACERAKRTLSSSTQASIEIDSLYDGIDFYTSITRARFEEMNAHLFKKTLEPVEKAI 414
Query: 181 RDAKMD-KAQIHDIVLVGGSTRIPKVRS 261
+D+K++ K +I +IV+VGGSTRIPK++S
Sbjct: 415 KDSKLESKEKIDEIVMVGGSTRIPKIQS 442
Score = 85.0 bits (201), Expect = 6e-17
Identities = 43/74 (58%), Positives = 46/74 (62%)
Frame = +3
Query: 246 PQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGI 425
P+ Q LLQ+FFNGKELNKSINPDE ILHGDKSE QD G+
Sbjct: 438 PKIQSLLQNFFNGKELNKSINPDEAVAYGAAVQAAILHGDKSEATQDLLLLDVAPLTLGL 497
Query: 426 ETAGGVMTTLIKRN 467
ETAGGVMT IKRN
Sbjct: 498 ETAGGVMTAAIKRN 511
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 139 bits (337), Expect = 2e-33
Identities = 67/88 (76%), Positives = 74/88 (84%)
Frame = +2
Query: 509 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 688
SDNQP V I+VFEGER +TK NNLLGKF+L+GIPPAPRGVPQIEVTFDIDANGILNVSA
Sbjct: 433 SDNQPAVTIRVFEGERPLTKHNNLLGKFDLSGIPPAPRGVPQIEVTFDIDANGILNVSAK 492
Query: 689 EKSTNKENKITITNDKGRLFQGRDRRMV 772
+KST K ITITNDKGRL + RM+
Sbjct: 493 DKSTGKTGSITITNDKGRLSKEEIDRMI 520
Score = 138 bits (333), Expect = 6e-33
Identities = 63/86 (73%), Positives = 77/86 (89%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSL 180
RLRTACERAKRTLSSST+ASIE+DSLFEGIDFYT I+RARFE+L +DLF S ++PV K+L
Sbjct: 263 RLRTACERAKRTLSSSTEASIEVDSLFEGIDFYTKISRARFEDLCSDLFLSCLDPVNKAL 322
Query: 181 RDAKMDKAQIHDIVLVGGSTRIPKVR 258
DAK K+ IH++VLVGGSTR+PK++
Sbjct: 323 SDAKFSKSDIHEVVLVGGSTRVPKIQ 348
Score = 75.4 bits (177), Expect = 5e-14
Identities = 38/74 (51%), Positives = 47/74 (63%)
Frame = +3
Query: 246 PQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGI 425
P+ QK+L+++F+GK LNKSINPDE IL GDKS+EV+D GI
Sbjct: 345 PKIQKMLEEYFSGKSLNKSINPDEAVAYGAAVQAAILSGDKSDEVKDVLLVDVAPLSLGI 404
Query: 426 ETAGGVMTTLIKRN 467
ETAG VMT LI+RN
Sbjct: 405 ETAGEVMTKLIERN 418
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 123 bits (297), Expect = 1e-28
Identities = 61/88 (69%), Positives = 68/88 (77%)
Frame = +2
Query: 509 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 688
+DNQ V IQVFEGER MTKDN+ LGKF+L GIPPAPRGVPQIEVTF+ID NGIL VSA
Sbjct: 1127 ADNQNTVTIQVFEGERPMTKDNHPLGKFDLNGIPPAPRGVPQIEVTFEIDVNGILRVSAE 1186
Query: 689 EKSTNKENKITITNDKGRLFQGRDRRMV 772
+K T + KITITND+ RL RMV
Sbjct: 1187 DKGTGNKEKITITNDQNRLTPEDIERMV 1214
Score = 114 bits (275), Expect = 7e-26
Identities = 55/90 (61%), Positives = 70/90 (77%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSL 180
+LR E+AKR LS+ QA +EI+S FEG DF +TRARFEELNA LF+ST++PV+K L
Sbjct: 959 KLRREVEKAKRALSTQHQARVEIESFFEGEDFSEMLTRARFEELNAKLFKSTLKPVQKVL 1018
Query: 181 RDAKMDKAQIHDIVLVGGSTRIPKVRSSCK 270
DA + K++IH+IVLVGGSTRIPKV+ K
Sbjct: 1019 EDADLKKSEIHEIVLVGGSTRIPKVQQLVK 1048
Score = 55.6 bits (128), Expect = 4e-08
Identities = 30/74 (40%), Positives = 40/74 (54%)
Frame = +3
Query: 246 PQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGI 425
P+ Q+L++DFF GKE ++ INPDE +L G+ E+ + GI
Sbjct: 1041 PKVQQLVKDFFEGKEPSRGINPDEAVAYGAAVQAGVLGGE--EDTGEVVLLDVNPLTLGI 1098
Query: 426 ETAGGVMTTLIKRN 467
ET GGVMT LI RN
Sbjct: 1099 ETVGGVMTKLISRN 1112
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 105 bits (252), Expect = 4e-23
Identities = 49/77 (63%), Positives = 60/77 (77%)
Frame = +2
Query: 509 SDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAI 688
+D Q V I+VF+GER M DN LLG+F+L GIPPAPRGVPQ+EVTFDIDANGI+NVSA
Sbjct: 238 ADGQTQVEIKVFQGEREMAIDNKLLGQFQLVGIPPAPRGVPQVEVTFDIDANGIVNVSAR 297
Query: 689 EKSTNKENKITITNDKG 739
+K T +E +I I + G
Sbjct: 298 DKGTGREQQIVIQSSGG 314
Score = 70.5 bits (165), Expect = 1e-12
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEIDSLFEGID----FYTSITRARFEELNADLFRSTMEPV 168
RLR A E+AK LSSS Q I + + ++R++FE L ADL T+ P
Sbjct: 69 RLREAAEKAKIELSSSVQTDINLPYITVDASGPKHLNMKLSRSKFESLVADLINRTVGPC 128
Query: 169 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVRSS 264
+K L+DA+++K +I D++LVGG TR+PKV+ +
Sbjct: 129 KKCLQDAEINKGEIGDVLLVGGMTRMPKVQQT 160
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/80 (36%), Positives = 39/80 (48%)
Frame = +3
Query: 228 GWLHSYPQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXX 407
G + P+ Q+ +QD F G+ +K++NPDE +L GD V+D
Sbjct: 149 GGMTRMPKVQQTVQDIF-GRVPSKAVNPDEAVAIGAAIQGGVLAGD----VKDVLLLDVT 203
Query: 408 XXXXGIETAGGVMTTLIKRN 467
GIET GGV T LI RN
Sbjct: 204 PLSLGIETLGGVFTKLITRN 223
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 71.7 bits (168), Expect = 6e-13
Identities = 35/91 (38%), Positives = 59/91 (64%), Gaps = 5/91 (5%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEI--DSLFEG---IDFYTSITRARFEELNADLFRSTMEP 165
RLR E AK L+ + + +I++ SL EG + F +I+R FE +N DLF+ ++P
Sbjct: 290 RLRQEVEAAKINLTRTNEVTIKLMLPSLSEGKKIVKFKETISRKMFETINEDLFKKVLQP 349
Query: 166 VEKSLRDAKMDKAQIHDIVLVGGSTRIPKVR 258
+ + L + ++ K ++ ++VLVGGSTR+PK+R
Sbjct: 350 IRRVLAEVELPKEEVDEVVLVGGSTRVPKIR 380
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 68.1 bits (159), Expect = 7e-12
Identities = 31/81 (38%), Positives = 48/81 (59%)
Frame = +1
Query: 22 RAKRTLSSSTQASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKSLRDAKMDK 201
R K+ LS++ + +I+ +F+G DF +TR EE+ DLF PV ++L+ A M
Sbjct: 253 RVKQVLSANNEIFAQIEGVFDGKDFRVKVTREELEEMCQDLFDRVAGPVNRALKSASMTM 312
Query: 202 AQIHDIVLVGGSTRIPKVRSS 264
I +VLVGG R+PKV+ +
Sbjct: 313 NDIDSVVLVGGGIRVPKVQDA 333
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 58.8 bits (136), Expect = 5e-09
Identities = 25/53 (47%), Positives = 41/53 (77%)
Frame = +1
Query: 106 ITRARFEELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVRSS 264
++R++FE L ADL T+ P +K L+DA+++K +I D++LVGG TR+PKV+ +
Sbjct: 53 LSRSKFESLVADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQT 105
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/80 (36%), Positives = 39/80 (48%)
Frame = +3
Query: 228 GWLHSYPQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXX 407
G + P+ Q+ +QD F G+ +K++NPDE +L GD V+D
Sbjct: 94 GGMTRMPKVQQTVQDIF-GRVPSKAVNPDEAVAIGAAIQGGVLAGD----VKDVLLLDVT 148
Query: 408 XXXXGIETAGGVMTTLIKRN 467
GIET GGV T LI RN
Sbjct: 149 PLSLGIETLGGVFTKLITRN 168
Score = 37.5 bits (83), Expect = 0.012
Identities = 17/30 (56%), Positives = 22/30 (73%)
Frame = +2
Query: 509 SDNQPGVLIQVFEGERAMTKDNNLLGKFEL 598
+D Q V I+VF+GER M DN LLG+F+L
Sbjct: 183 ADGQTQVEIKVFQGEREMAIDNKLLGQFQL 212
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 42.3 bits (95), Expect = 4e-04
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Frame = +1
Query: 1 RLRTACERAKRTLSSST-QASIEIDSLFEGIDFYTSITRARFEELNADLFRSTMEPVEKS 177
+L CE+ K+ +S++T + I I+ E D + + RA+FEEL ADL + P+ +
Sbjct: 322 KLGAECEKLKKLMSANTSEIPINIECFMEDKDVHGRMKRAQFEELAADLLKLVEAPLRSA 381
Query: 178 LRDAKMDKAQIHDIV 222
L A+ K + ++V
Sbjct: 382 L--AQSGKYSVKNVV 394
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 36.7 bits (81), Expect = 0.021
Identities = 16/38 (42%), Positives = 25/38 (65%)
Frame = +1
Query: 1 RLRTACERAKRTLSSSTQASIEIDSLFEGIDFYTSITR 114
+L+T+ E+ K LS+ A+ +DSL EGIDF ++R
Sbjct: 228 KLQTSAEQCKNILSTLESANCSVDSLCEGIDFQGQVSR 265
>SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 32.7 bits (71), Expect = 0.34
Identities = 16/45 (35%), Positives = 26/45 (57%)
Frame = +3
Query: 246 PQGQKLLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEV 380
P+ Q+LL+++F GKE+ + I+PDE IL G K ++
Sbjct: 53 PKIQQLLKNYFVGKEICRRISPDEVVAYGAAVQASILMGRKEADM 97
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 217 IVLVGGSTRIPKVRSSCKISLM 282
++LVGG+TR PK+ S C ++
Sbjct: 4 VILVGGATRTPKLHSPCPYDVL 25
>SB_29552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 339
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/63 (25%), Positives = 34/63 (53%)
Frame = +2
Query: 539 VFEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAIEKSTNKENKI 718
+FE ++ + + + G EL PPA V ++E +F+ +G+++ + S+ +E K
Sbjct: 125 IFEPRESVPRQSQVPGAMELLPPPPAVFNVNEVETSFEELKSGLMSSGNSDMSSLEELKE 184
Query: 719 TIT 727
+T
Sbjct: 185 CVT 187
>SB_26282| Best HMM Match : Tctex-1 (HMM E-Value=3.1e-14)
Length = 273
Score = 31.5 bits (68), Expect = 0.79
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -3
Query: 422 TEGKGCYIKQQQILHLLRLVTVQDSSLDSCTISYGLVRVNRFVELLSIKEILQELLTLGI 243
T G I+QQQ LRLVT Q + ++ + L ++ FV LL K ++ + L I
Sbjct: 9 TAGAAVAIEQQQDSAYLRLVTPQRTETETYVVLCNLRQLQTFVSLLIAKYLIVKKDLLPI 68
Query: 242 R 240
R
Sbjct: 69 R 69
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 643 HLRHRCQRYPQRFRYREVHQQGEQDHHYQRQR 738
H +H+ ++ Q+ +Y++ HQ Q H Q+Q+
Sbjct: 291 HQQHQLHQHQQQHQYQQQHQHQHQHQHQQQQQ 322
>SB_32413| Best HMM Match : HEAT (HMM E-Value=0.00039)
Length = 695
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 270 LAGASDLGDTSGATHQYNIVDLSLIHLGITERLLHWLHGR 151
LAG DL D G +V L+ I E+L+H LH R
Sbjct: 549 LAGVMDLSDEVGRKRLGQLVHELLVSPNIPEQLVHVLHSR 588
>SB_19601| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 29.9 bits (64), Expect = 2.4
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +2
Query: 626 VPQIEVTFDIDANGILNVSAIEKSTNKENKITITNDKGRLFQG 754
VP+I + D + I V + ++ +NKI ND+G++ G
Sbjct: 62 VPEITESIDFASGSIREVPSSTENKGNKNKILEKNDQGKMING 104
>SB_8849| Best HMM Match : F-box (HMM E-Value=0.86)
Length = 1222
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/45 (33%), Positives = 29/45 (64%)
Frame = -3
Query: 476 DGSVTLDECGHDTSSSLNTEGKGCYIKQQQILHLLRLVTVQDSSL 342
DG+V LDE + +++SL++ G C + ++ + + TV++SSL
Sbjct: 1160 DGAVLLDEWNYGSNASLSSCGSTC--SESRLSYFIGQDTVEESSL 1202
>SB_37567| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 278
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = -2
Query: 618 GAGGIPVSSNLPSKLLSLVIARSPSNTWM 532
G GG PV+S SKL++ VIA SN+++
Sbjct: 21 GRGGSPVTSRPGSKLINHVIASFQSNSFI 49
>SB_25455| Best HMM Match : DUF948 (HMM E-Value=0.11)
Length = 260
Score = 28.3 bits (60), Expect = 7.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +1
Query: 67 IDSLFEGIDFYTSITRARFEELNAD--LFRSTMEPVEKSLRD 186
+DSL +DF T+ T A F +LN R T+ + SL +
Sbjct: 168 LDSLAVRVDFTTNTTNALFTQLNTTDAAIRDTLSQINSSLSE 209
>SB_5592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1092
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 207 NPRYCTGGWLHSYPQGQKLLQD 272
NPRY G WLH P G+ L +D
Sbjct: 694 NPRY--GEWLHKKPGGRNLCKD 713
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,934,584
Number of Sequences: 59808
Number of extensions: 500614
Number of successful extensions: 3849
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 3674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3844
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2131907602
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -