Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0441.Seq
         (781 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.2  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.2  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    21   9.7  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.7  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +1

Query: 682  RYREVHQQGEQDHHYQRQRSSLPRK 756
            R REVH  G+Q+   ++  +S P++
Sbjct: 1425 REREVHNGGQQEDRDRKTLTSAPQQ 1449



 Score = 21.4 bits (43), Expect = 9.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 463  VTLPSPLNRLRHSPP 507
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 232 GSTRIPKVRSSCKISLM 282
           GSTR P  R+SC+  +M
Sbjct: 399 GSTRRPSRRNSCESQMM 415


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 573 LSLVIARSPSNTWMSTPGWLSDRW 502
           LS +I  +  N  M+T  W+  RW
Sbjct: 67  LSQLIEMNLKNQVMTTNVWVEQRW 90


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -2

Query: 624 PRGAGGIPVS 595
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,518
Number of Sequences: 438
Number of extensions: 4573
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)