Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0437.Seq
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.2  
07_03_0846 - 21983581-21986055                                         29   2.8  
06_03_1191 + 28286685-28287008,28287149-28287211,28287377-282874...    29   4.9  
03_05_0823 - 27970038-27970258,27970279-27970544,27970608-279706...    28   6.4  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   8.5  
02_04_0276 + 21491150-21492761,21492891-21492947,21493817-214938...    28   8.5  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    28   8.5  

>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 222 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 88
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +2

Query: 80  DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 229
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>06_03_1191 +
           28286685-28287008,28287149-28287211,28287377-28287461,
           28287561-28287623,28287954-28288029,28288190-28288223,
           28289553-28289659,28289738-28289807,28289852-28289950
          Length = 306

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +2

Query: 158 LEPPDSRGSTVSISLPDSARLASALEAFRHNPGMVASHHRPLGR 289
           L P D   +     LP  A+       FR  PG V+SH R  G+
Sbjct: 62  LPPRDELRTLFIAGLPGDAKAREVYNLFRDFPGYVSSHLRTSGK 105


>03_05_0823 -
           27970038-27970258,27970279-27970544,27970608-27970657,
           27971272-27971538,27971633-27972001,27972373-27973278
          Length = 692

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 3/98 (3%)
 Frame = +2

Query: 8   RHRTELYPDLRSR-DARVKKKTDSIDLRDPNGLRRRVSRFECET--RLVKSHCLEPPDSR 178
           RH   L  ++RS  D     KT  ++L    GL          +   L  SH L    + 
Sbjct: 144 RHVRMLTHEIRSTLDRHTILKTTLVELGGTLGLEECALWMPSRSGSSLQLSHTLRHQITV 203

Query: 179 GSTVSISLPDSARLASALEAFRHNPGMVASHHRPLGRV 292
           GSTVSI+LP         + F  N  ++  H  PL R+
Sbjct: 204 GSTVSINLP------VVNQVFSSNRAIIIPHTSPLARI 235


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 231 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 58
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 57  TRASR 43
           TRA+R
Sbjct: 64  TRAAR 68


>02_04_0276 +
           21491150-21492761,21492891-21492947,21493817-21493870,
           21493994-21494022
          Length = 583

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 4/63 (6%)
 Frame = -1

Query: 309 RTFGSCTRPSGRWCEATIPGLCLNASKAEAS--LAESGKDMLTVEPRESG--GSKQCDFT 142
           R  GS  RP    C A I  L  +   AEA   LA  G D++      +G  G+ Q D  
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAA 145

Query: 141 SRV 133
            R+
Sbjct: 146 RRL 148


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 580 YKEFLARG-ARKVTTGITGLWQPSVIATLLFD 488
           YK F A G  RKV  GIT  + PS++  L FD
Sbjct: 633 YKIFQAFGLVRKVEKGITRWYYPSMLDDLAFD 664


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,073,400
Number of Sequences: 37544
Number of extensions: 429439
Number of successful extensions: 1144
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)