Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0437.Seq
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g54020.2 68414.m06155 myrosinase-associated protein, putative...    29   2.3  
At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family prote...    29   3.1  
At1g14740.1 68414.m01762 expressed protein                             29   4.1  
At5g27660.1 68418.m03315 DegP protease, putative similar to Seri...    28   7.1  
At5g18000.1 68418.m02111 transcriptional factor B3 family protei...    28   7.1  
At4g35730.1 68417.m05071 expressed protein  contains Pfam profil...    28   7.1  
At3g44800.1 68416.m04826 meprin and TRAF homology domain-contain...    27   9.4  
At1g67970.1 68414.m07764 heat shock factor protein, putative (HS...    27   9.4  
At1g06460.1 68414.m00684 31.2 kDa small heat shock family protei...    27   9.4  

>At1g54020.2 68414.m06155 myrosinase-associated protein, putative
           strong similarity to myrosinase-associated proteins
           GI:1769968, GI:1769970, GI:1216389,GI:1216391 from
           [Brassica napus]; contains InterPro Entry IPR001087
           Lipolytic enzyme, G-D-S-L family
          Length = 372

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -3

Query: 514 SVIATLLFDPSMSALPIIAKQNSPSVGLFT 425
           SV+  LL  P +  L  I+ QN P+VGLFT
Sbjct: 7   SVLGILLVFPLLHNLVTISGQNLPAVGLFT 36


>At3g52160.1 68416.m05726 beta-ketoacyl-CoA synthase family protein
           beta-ketoacyl-CoA synthase - Simmondsia
           chinensis,PID:g1045614
          Length = 451

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 687 LSEDRNLAWSKRAKAGLIQMFSTHRDCESTAYRSFSIK 574
           LS  R   W  RAK  L+Q+  TH+  E T+Y+S  ++
Sbjct: 282 LSSRRIDRW--RAKYQLMQLVRTHKGMEDTSYKSIELR 317


>At1g14740.1 68414.m01762 expressed protein
          Length = 733

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
 Frame = -1

Query: 339 YCSVREEPQFRTFGSCTRP-SGRWCEATIPGLCLNASKAEASLAESGKDMLTVEPRESGG 163
           + +VR       F S + P SG   E T+  LC N+ K   SL + GK+++T     S  
Sbjct: 46  FLNVRSNNLDGGFSSKSSPRSGN--ELTLSYLCENSGKLAESLGQKGKEVVTFSENSSYD 103

Query: 162 SK--QCDFTSRVSHSKRETRRRS 100
            K  + DF +    +   ++R++
Sbjct: 104 DKWVERDFFNLREMNPNSSKRKA 126


>At5g27660.1 68418.m03315 DegP protease, putative similar to Serine
           protease HTRA2, mitochondrial precursor (High
           temperature requirement protein A2) (HtrA2) (Omi
           stress-regulated endoprotease) (Serine proteinase OMI)
           (SP:O43464) {Homo sapiens}
          Length = 459

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/38 (36%), Positives = 27/38 (71%)
 Frame = +2

Query: 167 PDSRGSTVSISLPDSARLASALEAFRHNPGMVASHHRP 280
           PD+R + VS+++P+S R + +L  ++ +PG++   HRP
Sbjct: 67  PDAR-TRVSLAIPESVRESLSLLPWQISPGLI---HRP 100


>At5g18000.1 68418.m02111 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 307

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 458 RNDRKSRHRRIKKQRRYNAWLPQASYPC 541
           R +RKS ++ +KK+    +W  ++S+PC
Sbjct: 135 REERKSIYKDVKKEEEIESW-SESSHPC 161


>At4g35730.1 68417.m05071 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 430

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 170 DSRGSTVSISLPDSARLASALEAFRHNPG 256
           DS G  V   LPD   LA+  EA RH+ G
Sbjct: 399 DSSGHQVHPKLPDYDILAARFEAIRHSKG 427


>At3g44800.1 68416.m04826 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein
          Length = 564

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +2

Query: 2   EPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVKSH 154
           +PR R  LY D  +  + + K+T S+D+   NG +   S+ E   R+ + H
Sbjct: 149 KPRKRMRLYGDGGAVSSHLHKETSSVDV---NGFQVLPSQAESVKRIFERH 196


>At1g67970.1 68414.m07764 heat shock factor protein, putative (HSF5)
           / heat shock transcription factor, putative (HSTF5)
           identical to heat shock transcription factor 5 (HSF5)
           SP:Q9S7U5 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00447 HSF-type DNA-binding domain
          Length = 374

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/44 (27%), Positives = 22/44 (50%)
 Frame = -1

Query: 279 GRWCEATIPGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCD 148
           G W +  +       +K + ++ + GKD LT+E  E  G+ + D
Sbjct: 286 GAWEKLLLLSPSRKKTKKQENIVKKGKDDLTLEEEEEDGTMELD 329


>At1g06460.1 68414.m00684 31.2 kDa small heat shock family protein /
           hsp20 family protein contains Pfam profile: PF00011
           Hsp20/alpha crystallin family
          Length = 285

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = -2

Query: 230 RPKPA*PNPARICSLWSPESREALNNVTLLVAFRIQNAR-RDVEAHLD 90
           RPK   P  A + ++WSP S  A +  + +VA  +  A   D+   +D
Sbjct: 169 RPKLDLPKLANLGTVWSPRSNVAESTHSYVVAIELPGASINDIRVEVD 216


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,715,484
Number of Sequences: 28952
Number of extensions: 326607
Number of successful extensions: 866
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)