Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0436.Seq
         (694 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.4  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.4  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   4.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   4.1  
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    22   5.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   7.2  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   7.2  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   7.2  
EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport pe...    21   9.6  
EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport pe...    21   9.6  
EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport pe...    21   9.6  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.6  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    21   9.6  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 230 GSPLCSPRRCPANAFPLYRWIRQRRGYP 147
           G+P+C       NA  L +W   + G+P
Sbjct: 324 GNPICVQIPWDKNAEALAKWANGQTGFP 351


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 448 DDLAQRCAQYKKDGCH 495
           D++A RCA  +++ CH
Sbjct: 161 DEIAIRCAFLERENCH 176


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +3

Query: 369 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVACVL 518
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  L
Sbjct: 178 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTAAAL 228


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
 Frame = +3

Query: 369 HHPRHQGRQGCRPAVRIGRRMHHPGSGRPRPAL-RPVQEGRLPLRQVACVL 518
           HH  H  +Q      + G  MH  G    +P + +   +G+ P    A  L
Sbjct: 180 HHQPHHQQQHMMYGGQQGANMHQQGPPHQQPPIQQQPNQGQQPPGNTAAAL 230


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -3

Query: 542 RGGVAADLQHASHLAK 495
           RGG AAD+Q+ + L K
Sbjct: 151 RGGAAADIQNYATLIK 166


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 200 PANAFPLYRWIRQRRGYP 147
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 200 PANAFPLYRWIRQRRGYP 147
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = -3

Query: 200 PANAFPLYRWIRQRRGYP 147
           P    P Y+W++ +R  P
Sbjct: 190 PQPVLPTYKWMQVKRNVP 207


>EF222299-1|ABN79659.1|  136|Tribolium castaneum ion transport
           peptide isoform C protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 693 QNDLQSPSGRGPGRARHQVRLRARQSARCVG 601
           Q    SP+GR P    H    R+    +C G
Sbjct: 25  QEITSSPAGRSPAFLPHHFTKRSFFDIQCKG 55


>EF222298-1|ABN79658.1|  120|Tribolium castaneum ion transport
           peptide isoform B protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 693 QNDLQSPSGRGPGRARHQVRLRARQSARCVG 601
           Q    SP+GR P    H    R+    +C G
Sbjct: 25  QEITSSPAGRSPAFLPHHFTKRSFFDIQCKG 55


>EF222297-1|ABN79657.1|  140|Tribolium castaneum ion transport
           peptide isoform A protein.
          Length = 140

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = -2

Query: 693 QNDLQSPSGRGPGRARHQVRLRARQSARCVG 601
           Q    SP+GR P    H    R+    +C G
Sbjct: 25  QEITSSPAGRSPAFLPHHFTKRSFFDIQCKG 55


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 251 GVGDNDDGSPLCSPRR 204
           G+ D  + +PL SPRR
Sbjct: 103 GMHDQQNNNPLPSPRR 118


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 217 HRGEPSSLSPTPISSDAV 270
           H GEP+ L+P  I +  V
Sbjct: 217 HTGEPTDLTPEQIQAAEV 234


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,879
Number of Sequences: 336
Number of extensions: 4138
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18218375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)