BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0436.Seq (694 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 28 1.1 SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 28 1.5 SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 2.6 SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 27 3.4 SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 26 4.5 SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 7.9 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 7.9 SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 7.9 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 28.3 bits (60), Expect = 1.1 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%) Frame = +1 Query: 109 AQEDRSSNCSSRK--GY----PRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPISSDAV 270 +Q+ SSN S+R GY P HRY + R+ R + SP P + ++V Sbjct: 790 SQKSTSSNTSNRNNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSRARSPEPTNRNSV 849 Query: 271 LSENI 285 S+N+ Sbjct: 850 QSKNV 854 >SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizosaccharomyces pombe|chr 3|||Manual Length = 963 Score = 27.9 bits (59), Expect = 1.5 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = -3 Query: 572 NIGVFLDSLVRGGVAADLQHASHLAKWQPSFLYW--AQRWARSSR 444 NI +FL SL GGVA +L AS + P +W A +W R Sbjct: 861 NITIFLVSLKAGGVALNLTEASQVFMMDP---WWNGAVQWQAMDR 902 >SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 735 Score = 27.1 bits (57), Expect = 2.6 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%) Frame = +1 Query: 256 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 435 S +A NI GV+ + ++ + + L +L EK G I GSE + Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399 Query: 436 -TQGLDDLAQRCAQYKKDGCHFAKW 507 T+ D+A+ A + K+G +F+ W Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424 >SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 963 Score = 26.6 bits (56), Expect = 3.4 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +2 Query: 86 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 250 P PE ++E K+A++ P K +A ES K +++ + + N YR L Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529 >SPBC25H2.03 |||vacuolar protein involved in phosphoinositide metabolism|Schizosaccharomyces pombe|chr 2|||Manual Length = 811 Score = 26.2 bits (55), Expect = 4.5 Identities = 15/47 (31%), Positives = 25/47 (53%) Frame = +2 Query: 176 GTMGKRLQDIGVENTEENRRRYRQLLSALTLCSPRTYLV*SCSTRPF 316 G + +QD+ V +TE+ R L + L S R Y++ + +TR F Sbjct: 178 GPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSERLYVI-NPNTRMF 223 >SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr 2|||Manual Length = 905 Score = 25.4 bits (53), Expect = 7.9 Identities = 10/36 (27%), Positives = 23/36 (63%) Frame = +1 Query: 355 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 462 L+K+G++P V++ +ED+ +T+G++ L + Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 25.4 bits (53), Expect = 7.9 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Frame = +1 Query: 217 HRGEPSSLSPTPISSDAVLSENISGVILFHETLYQKADD--GTPLVSLL 357 ++ PS+L+P +DA++SEN Y+ D PLV LL Sbjct: 530 NQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLL 578 >SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 455 Score = 25.4 bits (53), Expect = 7.9 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 124 SSNCSSRKGYPRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPISSDAVLSENISGV 294 + + SSRK Y R I +Y FA R P+S + P+ AV S + S V Sbjct: 25 AEDLSSRKTYARPVLIRQYRSLRFANKEENICRLTPNS-AFVPVRDSAVASISTSKV 80 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,984,571 Number of Sequences: 5004 Number of extensions: 64441 Number of successful extensions: 196 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 189 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 196 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 321951680 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -