Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0436.Seq
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    28   1.1  
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    28   1.5  
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc...    27   2.6  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    27   3.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    26   4.5  
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    25   7.9  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   7.9  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    25   7.9  

>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +1

Query: 109 AQEDRSSNCSSRK--GY----PRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPISSDAV 270
           +Q+  SSN S+R   GY    P     HRY   +    R+   R    + SP P + ++V
Sbjct: 790 SQKSTSSNTSNRNNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSRARSPEPTNRNSV 849

Query: 271 LSENI 285
            S+N+
Sbjct: 850 QSKNV 854


>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -3

Query: 572 NIGVFLDSLVRGGVAADLQHASHLAKWQPSFLYW--AQRWARSSR 444
           NI +FL SL  GGVA +L  AS +    P   +W  A +W    R
Sbjct: 861 NITIFLVSLKAGGVALNLTEASQVFMMDP---WWNGAVQWQAMDR 902


>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 735

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECT 435
           S +A    NI GV+    +  ++  + + L +L EK G    I          GSE   +
Sbjct: 349 SYNASFLVNIVGVVATLSSSSEENSEASNLSTLFEKSGNFEEI---------LGSESHSS 399

Query: 436 -TQGLDDLAQRCAQYKKDGCHFAKW 507
            T+   D+A+  A + K+G +F+ W
Sbjct: 400 ITEKTRDIAKNVATWLKNGENFSSW 424


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +2

Query: 86  PTPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQL 250
           P PE ++E  K+A++   P K   +A ES     K  +++  + +  N   YR L
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSKVPENL--KESHVNETPYRGL 529


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +2

Query: 176 GTMGKRLQDIGVENTEENRRRYRQLLSALTLCSPRTYLV*SCSTRPF 316
           G +   +QD+ V +TE+ R     L   + L S R Y++ + +TR F
Sbjct: 178 GPVSSSIQDVPVMSTEQPRMHTFSLSELVPLLSERLYVI-NPNTRMF 223


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/36 (27%), Positives = 23/36 (63%)
 Frame = +1

Query: 355 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 462
           L+K+G++P   V++       +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 217 HRGEPSSLSPTPISSDAVLSENISGVILFHETLYQKADD--GTPLVSLL 357
           ++  PS+L+P    +DA++SEN           Y+  D     PLV LL
Sbjct: 530 NQSTPSTLAPNVAETDALVSENTGAASQKTSKSYKTNDSLKVPPLVPLL 578


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 124 SSNCSSRKGYPRR*RIHRYNGKAFAGHRRGEHRGEPSSLSPTPISSDAVLSENISGV 294
           + + SSRK Y R   I +Y    FA       R  P+S +  P+   AV S + S V
Sbjct: 25  AEDLSSRKTYARPVLIRQYRSLRFANKEENICRLTPNS-AFVPVRDSAVASISTSKV 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,984,571
Number of Sequences: 5004
Number of extensions: 64441
Number of successful extensions: 196
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 196
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)