Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0436.Seq
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0) 127 1e-29
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0) 127 1e-29
SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26) 33 0.22
SB_26407| Best HMM Match : UQ_con (HMM E-Value=0) 33 0.22
SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8) 31 1.2
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32) 30 2.0
SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25) 30 2.0
SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2) 30 2.0
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 29 3.6
SB_57379| Best HMM Match : SCP (HMM E-Value=5.8e-19) 28 8.3
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_18905| Best HMM Match : Nop (HMM E-Value=0) 28 8.3
SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0) 28 8.3
SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9) 28 8.3
>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 949
Score = 127 bits (306), Expect = 1e-29
Identities = 61/85 (71%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DEC 432
+S +S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E
Sbjct: 62 TSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGET 121
Query: 433 TTQGLDDLAQRCAQYKKDGCHFAKW 507
TTQGLD L +RCAQYKKDGC FAKW
Sbjct: 122 TTQGLDGLGERCAQYKKDGCDFAKW 146
Score = 94.3 bits (224), Expect = 8e-20
Identities = 46/55 (83%), Positives = 50/55 (90%)
Frame = +2
Query: 89 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLL 253
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLL
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLL 60
Score = 88.6 bits (210), Expect = 4e-18
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +3
Query: 510 CVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTE 683
CVLKI TPS A++ENANVLARYASICQ +VPIVEPEVL DG+H L+RAQKVTE
Sbjct: 148 CVLKITDYTPSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQKVTE 205
>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
Length = 304
Score = 127 bits (306), Expect = 1e-29
Identities = 61/85 (71%), Positives = 68/85 (80%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 SSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE-DEC 432
+S +S ISGVILFHET+YQKADDGTP V LL +GIIPGIKVDKGVV L G++ E
Sbjct: 62 TSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTDAGET 121
Query: 433 TTQGLDDLAQRCAQYKKDGCHFAKW 507
TTQGLD L +RCAQYKKDGC FAKW
Sbjct: 122 TTQGLDGLGERCAQYKKDGCDFAKW 146
Score = 94.3 bits (224), Expect = 8e-20
Identities = 46/55 (83%), Positives = 50/55 (90%)
Frame = +2
Query: 89 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTEENRRRYRQLL 253
TPEL+ ELK+IA+AIVA KGILAADESTGTMGKRL +IGVENTEENRR YRQLL
Sbjct: 6 TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTEENRRLYRQLL 60
Score = 88.6 bits (210), Expect = 4e-18
Identities = 43/58 (74%), Positives = 48/58 (82%)
Frame = +3
Query: 510 CVLKIGRNTPSYQAIQENANVLARYASICQSQRIVPIVEPEVLPDGEHDLDRAQKVTE 683
CVLKI TPS A++ENANVLARYASICQ +VPIVEPEVL DG+H L+RAQKVTE
Sbjct: 148 CVLKITDYTPSELAMKENANVLARYASICQQNGLVPIVEPEVLCDGDHTLERAQKVTE 205
>SB_25799| Best HMM Match : DUF618 (HMM E-Value=2e-26)
Length = 687
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +3
Query: 306 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 476
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 359 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 418
Query: 477 QEGRLPLRQ 503
+ GR P Q
Sbjct: 419 EPGRPPYEQ 427
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +3
Query: 306 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 476
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 324 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 383
Query: 477 QEGRLP 494
+ GR P
Sbjct: 384 EPGRPP 389
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +3
Query: 306 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 476
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 331 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 390
Query: 477 QEGRLP 494
+ GR P
Sbjct: 391 EPGRPP 396
>SB_26407| Best HMM Match : UQ_con (HMM E-Value=0)
Length = 1282
Score = 33.1 bits (72), Expect = 0.22
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Frame = +3
Query: 306 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 476
R P G + G P E G P GR + RP +GR H PG P P
Sbjct: 125 RPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPHEPGRPPHELGRPPHEPGRPPHEPGRLPH 184
Query: 477 QEGRLPLRQ 503
+ GR P Q
Sbjct: 185 EPGRPPYEQ 193
Score = 31.9 bits (69), Expect = 0.51
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +3
Query: 306 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 476
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 90 RPPYEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPY 149
Query: 477 QEGRLP 494
+ GR P
Sbjct: 150 EPGRPP 155
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Frame = +3
Query: 306 RDPLPEG*RWNASGLPAGEEGHHPRHQGR---QGCRPAVRIGRRMHHPGSGRPRPALRPV 476
R P G + G P E G P GR + RP GR H PG P P
Sbjct: 97 RPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPHEPGRPPYEPGRPPH 156
Query: 477 QEGRLP 494
+ GR P
Sbjct: 157 EPGRPP 162
>SB_45264| Best HMM Match : DUF1590 (HMM E-Value=2.8)
Length = 348
Score = 30.7 bits (66), Expect = 1.2
Identities = 31/111 (27%), Positives = 43/111 (38%), Gaps = 9/111 (8%)
Frame = -3
Query: 527 ADLQHASHLAKWQPSFLYW--AQRWARSSRPWV--VHSSSDPNSGTTPLSTLMPG----- 375
A Q S++ Q F W A+ WA S+ S S + TT + + G
Sbjct: 2 AQSQQTSYIFYTQEEFTTWPEAKGWASKSKTMYRKPSSRSGVTASTTGIKHKLSGGTTWV 61
Query: 374 MMPFFSSRETRGVPSSAFW*RVSWNRITPDMFSESTASELIGVGDNDDGSP 222
+P S T G SA W ++ + ST +E G G N GSP
Sbjct: 62 QIPHLYSPHTWGRSESALWRSCTFQQSMHGRNRRSTTTERSGCGSN-GGSP 111
>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 283 ISGVILFHETLYQKADDGTPLVSLLEKK 366
+SG ++ +E L+Q DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130
>SB_32406| Best HMM Match : VWA (HMM E-Value=8.8e-32)
Length = 1074
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Frame = +3
Query: 333 WNASGLPAGEEGHHPRHQGRQGCRPAVRIGRRMHHPGSGR---PRPALRPVQEGRLP 494
W G+P G P GR G P G + G+ PRP +RP + GR+P
Sbjct: 515 WRPGGIPGRTPGRRPG--GRPGNIPPFVPGLIIPSRRPGKRPGPRPGIRPGRGGRIP 569
>SB_20574| Best HMM Match : Extensin_2 (HMM E-Value=0.25)
Length = 1508
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 250 PISSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVD 393
P++S L +++ G+ ++Q A D PL++ + IIPG+ ++
Sbjct: 695 PVTSPVTLPDSVPGLPAVPSIMHQ-ARDSPPLLTFFSRNDIIPGLDLN 741
>SB_12027| Best HMM Match : Extensin_2 (HMM E-Value=0.2)
Length = 1706
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/48 (27%), Positives = 27/48 (56%)
Frame = +1
Query: 250 PISSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVD 393
P++S L +++ G+ ++Q A D PL++ + IIPG+ ++
Sbjct: 56 PVTSPVTLPDSVPGLPAVPSIMHQ-ARDSPPLLTFFSRNDIIPGLDLN 102
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 473 WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 351
WAQ ++ SS PW S + SGT S+L ++ +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948
>SB_57379| Best HMM Match : SCP (HMM E-Value=5.8e-19)
Length = 168
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 5/63 (7%)
Frame = -3
Query: 560 FLDSLVRGGVAADLQHASHLAKWQPSFLYWAQRWAR-----SSRPWVVHSSSDPNSGTTP 396
F DS V + +H + W P AQ WA + PW +H SS
Sbjct: 29 FADSCVVVHNSVRQKHGAPQVTWDPELASRAQIWANKLSSGAVLPWEIHESSSDGENIAY 88
Query: 395 LST 387
LS+
Sbjct: 89 LSS 91
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = +1
Query: 523 SAATPPRTKLSRKTPMFSPATLPSVRANASCRLSSPKSYLMASTTWTA 666
S +P + +++TP SPAT R NA R SSP+S WT+
Sbjct: 790 SETSPQLSSTAQQTPPHSPAT----RHNA--RTSSPQSLATRHNAWTS 831
>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
Length = 194
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Frame = +2
Query: 74 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 202
YF + ++++K A IVA AK LAA EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158
>SB_24473| Best HMM Match : An_peroxidase (HMM E-Value=0)
Length = 647
Score = 27.9 bits (59), Expect = 8.3
Identities = 22/85 (25%), Positives = 40/85 (47%)
Frame = +2
Query: 2 RIRKVLVFRVVINTRIKK*STMSTYFQYPTPELQEELKKIAQAIVAPAKGILAADESTGT 181
R K + ++ NT+ + S + F++P+PE Q+ IA+A + I E
Sbjct: 37 RALKSSIRKLFRNTQPRSPSDLLALFRFPSPEAQQ----IARAAEVFERTIQLVHEHVAD 92
Query: 182 MGKRLQDIGVENTEENRRRYRQLLS 256
+ + ++ EN E N+ + LLS
Sbjct: 93 L--EMVNVTSENGERNQHSFFDLLS 115
>SB_1252| Best HMM Match : POPLD (HMM E-Value=1.9)
Length = 566
Score = 27.9 bits (59), Expect = 8.3
Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 4/94 (4%)
Frame = +3
Query: 375 PRHQGRQGCRPAVRIGRRMHHPGSGRPRPALRPVQEGRLPLRQVACVLK----IGRNTPS 542
PR + Q PA R + H PR P+Q R+P Q V + +G P
Sbjct: 109 PRQRPAQRPLPADRRSEPLSHSKRPPPRRWKAPLQRCRMPQTQHGAVDRLHDGLGCVVPG 168
Query: 543 YQAIQENANVLARYASICQSQRIVPIVEPEVLPD 644
+ + +RY + I+P V+ LP+
Sbjct: 169 WHSSDGREGGYSRYLML--PLEIIPAVKQRALPE 200
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,069,207
Number of Sequences: 59808
Number of extensions: 566429
Number of successful extensions: 1734
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1723
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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