Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0434.Seq
(782 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q08J56 Cluster: Putative uncharacterized protein orf49;... 146 7e-34
UniRef50_Q7AFU4 Cluster: C4-type zinc finger protein; n=19; root... 132 1e-29
UniRef50_Q38267 Cluster: Xis; n=12; root|Rep: Xis - Bacteriophag... 107 2e-22
UniRef50_Q38266 Cluster: Xis; n=1; Enterobacteria phage lambda|R... 72 1e-11
UniRef50_Q4QK09 Cluster: DnaK suppressor protein, bacteriophage ... 58 3e-07
UniRef50_Q286Y5 Cluster: Putative uncharacterized protein; n=1; ... 56 8e-07
UniRef50_A4JDG9 Cluster: Transcriptional regulator, TraR/DksA fa... 52 2e-05
UniRef50_Q19UR4 Cluster: Putative uncharacterized protein; n=3; ... 52 2e-05
UniRef50_Q9ZXI6 Cluster: Orf39; n=2; root|Rep: Orf39 - Pseudomon... 51 4e-05
UniRef50_A7N392 Cluster: Putative uncharacterized protein; n=1; ... 49 2e-04
UniRef50_Q7P162 Cluster: Putative uncharacterized protein; n=2; ... 47 6e-04
UniRef50_A1VH53 Cluster: Transcriptional regulator, TraR/DksA fa... 47 6e-04
UniRef50_P41059 Cluster: Uncharacterized 8.5 kDa protein in gpA ... 47 6e-04
UniRef50_Q88IG2 Cluster: C4-type zinc finger protein, DksA/TraR ... 46 8e-04
UniRef50_Q8W742 Cluster: Orf26; n=5; root|Rep: Orf26 - Vibrio ph... 46 8e-04
UniRef50_A4SL94 Cluster: Putative phage protein; n=2; root|Rep: ... 46 0.001
UniRef50_Q2CDV5 Cluster: C4-type zinc finger protein, DksA/TraR ... 45 0.002
UniRef50_Q7N7S5 Cluster: Similar to unknown protein; n=1; Photor... 45 0.002
UniRef50_Q9R2Q7 Cluster: C4-type zinc finger protein; n=5; Pseud... 44 0.004
UniRef50_Q1GJ67 Cluster: Transcriptional regulators TraR/DksA fa... 42 0.017
UniRef50_Q0HYS5 Cluster: Transcriptional regulators, TraR/DksA f... 42 0.017
UniRef50_A1VE28 Cluster: Transcriptional regulator, TraR/DksA fa... 42 0.017
UniRef50_A2I309 Cluster: Conjugative transfer protein; n=1; Vibr... 42 0.023
UniRef50_Q125W5 Cluster: Transcriptional regulators, TraR/DksA f... 40 0.070
UniRef50_Q0BZ89 Cluster: C4-type zinc finger protein, DksA/TraR ... 40 0.070
UniRef50_Q9MC51 Cluster: Orf77; n=1; Pseudomonas phage D3|Rep: O... 40 0.070
UniRef50_Q8H9Q7 Cluster: ORF8; n=1; Vibrio phage VHML|Rep: ORF8 ... 40 0.070
UniRef50_A1JNK3 Cluster: Hypothetical 8.2 kDa protein in gpa 5'r... 40 0.093
UniRef50_Q5QUB9 Cluster: DnaK suppressor protein; n=6; Gammaprot... 39 0.12
UniRef50_P41065 Cluster: Protein traR; n=11; root|Rep: Protein t... 39 0.12
UniRef50_Q5DZI6 Cluster: Zinc finger protein; n=22; Proteobacter... 38 0.21
UniRef50_Q1GXR9 Cluster: Transcriptional regulators, TraR/DksA f... 38 0.28
UniRef50_Q9ZC27 Cluster: Similar to AF063097_37 Bacteriophage P2... 38 0.37
UniRef50_Q65AH5 Cluster: TraR protein; n=3; Enterobacteriaceae|R... 37 0.50
UniRef50_A3EVE8 Cluster: Putative uncharacterized protein; n=1; ... 36 0.86
UniRef50_A0HAW8 Cluster: Transcriptional regulators, TraR/DksA f... 36 1.1
UniRef50_Q06424 Cluster: Uncharacterized 8.2 kDa protein in gpA ... 36 1.1
UniRef50_A4XZG1 Cluster: Transcriptional regulator, TraR/DksA fa... 36 1.5
UniRef50_Q7Q3X7 Cluster: ENSANGP00000011592; n=2; Culicidae|Rep:... 36 1.5
UniRef50_P41039 Cluster: Uncharacterized protein ybiI; n=32; Gam... 35 2.0
>UniRef50_Q08J56 Cluster: Putative uncharacterized protein orf49;
n=15; root|Rep: Putative uncharacterized protein orf49 -
Stx2-converting phage 86
Length = 93
Score = 146 bits (353), Expect = 7e-34
Identities = 69/93 (74%), Positives = 75/93 (80%)
Frame = -3
Query: 564 MHFSGSGLHILCAYACRHGLVQ*HLSRKTPFAALPVRLILKSKKARQQFPDKNVDDICRS 385
MHFSGSGLHILCAYACRHG ++ ++ + + K ARQQFPDKNVDDICRS
Sbjct: 1 MHFSGSGLHILCAYACRHGTCSMTPQQENALRSIARQTNSEIKNARQQFPDKNVDDICRS 60
Query: 384 VLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER 286
VLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER
Sbjct: 61 VLKKHRETVTLMGFTPTHLSLAIGMLNGVFKER 93
>UniRef50_Q7AFU4 Cluster: C4-type zinc finger protein; n=19;
root|Rep: C4-type zinc finger protein - Escherichia coli
O157:H7
Length = 73
Score = 132 bits (318), Expect = 1e-29
Identities = 59/61 (96%), Positives = 60/61 (98%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
MAD+IDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRL VQGCRTCASCQ
Sbjct: 1 MADLIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLAVQGCRTCASCQ 60
Query: 5 E 3
E
Sbjct: 61 E 61
>UniRef50_Q38267 Cluster: Xis; n=12; root|Rep: Xis - Bacteriophage
lambda
Length = 63
Score = 107 bits (258), Expect = 2e-22
Identities = 53/54 (98%), Positives = 54/54 (100%)
Frame = -2
Query: 739 RTSIEMAHSLAQIGIRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADERDQV 578
RTSIEMAHSLAQIGIRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADER+QV
Sbjct: 10 RTSIEMAHSLAQIGIRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADERNQV 63
>UniRef50_Q38266 Cluster: Xis; n=1; Enterobacteria phage lambda|Rep:
Xis - Bacteriophage lambda
Length = 61
Score = 72.1 bits (169), Expect = 1e-11
Identities = 29/29 (100%), Positives = 29/29 (100%)
Frame = -3
Query: 594 MRETRYDNHGMHFSGSGLHILCAYACRHG 508
MRETRYDNHGMHFSGSGLHILCAYACRHG
Sbjct: 1 MRETRYDNHGMHFSGSGLHILCAYACRHG 29
Score = 66.9 bits (156), Expect = 5e-10
Identities = 32/32 (100%), Positives = 32/32 (100%)
Frame = -2
Query: 508 TCSMTPQQENALRSIARQANSEIKKSQTAVSG 413
TCSMTPQQENALRSIARQANSEIKKSQTAVSG
Sbjct: 30 TCSMTPQQENALRSIARQANSEIKKSQTAVSG 61
>UniRef50_Q4QK09 Cluster: DnaK suppressor protein, bacteriophage
PSP3 gp34 homolog; n=5; Haemophilus influenzae|Rep: DnaK
suppressor protein, bacteriophage PSP3 gp34 homolog -
Haemophilus influenzae (strain 86-028NP)
Length = 71
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
M D D A ++EE+QR A+K R +A+S +C +C PI E+RR ++QG C +CQ
Sbjct: 1 MTDQFDRAQQLEEMQREIALKKHR-TFKAVSRLYCEDCDAPIPEKRRQMIQGVTRCVTCQ 59
Query: 5 E 3
+
Sbjct: 60 Q 60
>UniRef50_Q286Y5 Cluster: Putative uncharacterized protein; n=1;
Phage phiV10|Rep: Putative uncharacterized protein -
Phage phiV10
Length = 64
Score = 56.4 bits (130), Expect = 8e-07
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = -2
Query: 739 RTSIEMAHSLAQIGIRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEADERDQ 581
R +E A+ LA GIRFVPIP TD EF TL+A + K+E + A+AE +E Q
Sbjct: 10 RKCLETANMLAHSGIRFVPIPAVTDAEFATLSAIFADKIESLAAEAEMEENQQ 62
>UniRef50_A4JDG9 Cluster: Transcriptional regulator, TraR/DksA
family; n=1; Burkholderia vietnamiensis G4|Rep:
Transcriptional regulator, TraR/DksA family -
Burkholderia vietnamiensis (strain G4 / LMG 22486)
(Burkholderiacepacia (strain R1808))
Length = 77
Score = 51.6 bits (118), Expect = 2e-05
Identities = 29/63 (46%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Frame = -1
Query: 179 DIIDSASEIEELQRNTAIKMR-RLNHQAISATHCCE---CGDPIDERRRLVVQGCRTCAS 12
D D AS+IEE R AI R H A + C+ CG+PI E RR V GCR C
Sbjct: 2 DDFDHASDIEEQYRALAIAAATRPVHSAAESESFCQNEACGEPIPEERRRAVSGCRFCVE 61
Query: 11 CQE 3
CQE
Sbjct: 62 CQE 64
>UniRef50_Q19UR4 Cluster: Putative uncharacterized protein; n=3;
root|Rep: Putative uncharacterized protein - Mannheimia
phage phiMhaA1-BAA410
Length = 73
Score = 51.6 bits (118), Expect = 2e-05
Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCE-CGDPIDERRRLVVQGCRTCASC 9
M+D ID A+E+ E R A+ N A ++ CE CG+PI E+RR +V GC C C
Sbjct: 1 MSDQIDRANELAEKAREAALAKILQNQTACTSLFECEDCGEPIPEKRREMVIGCTRCIEC 60
Query: 8 Q 6
Q
Sbjct: 61 Q 61
>UniRef50_Q9ZXI6 Cluster: Orf39; n=2; root|Rep: Orf39 - Pseudomonas
phage phiCTX
Length = 68
Score = 50.8 bits (116), Expect = 4e-05
Identities = 25/59 (42%), Positives = 30/59 (50%)
Frame = -1
Query: 179 DIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQE 3
D+ID A+E E A+ R A SA C +CG+ I E RR GC C SCQE
Sbjct: 2 DVIDQANERAENMVQAALAQRTNTRLAPSALWCEDCGEQIPEARRQAAPGCECCISCQE 60
>UniRef50_A7N392 Cluster: Putative uncharacterized protein; n=1;
Vibrio harveyi ATCC BAA-1116|Rep: Putative
uncharacterized protein - Vibrio harveyi ATCC BAA-1116
Length = 72
Score = 48.8 bits (111), Expect = 2e-04
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAI--KMRRLNHQAI--SATHCCECGDPIDERRRLVVQGCRTC 18
M D+ID A +IE A+ ++ R +A SA C ECGDPI E RR + GC+ C
Sbjct: 1 MPDVIDHACDIEAQLTEVALANQLARAKPKASRESAQECGECGDPIPEARRQHMTGCQYC 60
Query: 17 ASCQ 6
CQ
Sbjct: 61 THCQ 64
>UniRef50_Q7P162 Cluster: Putative uncharacterized protein; n=2;
Neisseriaceae|Rep: Putative uncharacterized protein -
Chromobacterium violaceum
Length = 65
Score = 46.8 bits (106), Expect = 6e-04
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
M D D ASE+E R A+ + +HC +CGD I + RR + C C CQ
Sbjct: 1 MTDFFDRASELETEFREQALARHFEQWRQNGLSHCEDCGDAIPDARRAAIPSCTRCVLCQ 60
Query: 5 E 3
+
Sbjct: 61 Q 61
>UniRef50_A1VH53 Cluster: Transcriptional regulator, TraR/DksA
family; n=2; Desulfovibrio vulgaris subsp. vulgaris
DP4|Rep: Transcriptional regulator, TraR/DksA family -
Desulfovibrio vulgaris subsp. vulgaris (strain DP4)
Length = 68
Score = 46.8 bits (106), Expect = 6e-04
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Frame = -1
Query: 179 DIIDSASEIEELQRNTAIKMRRLNHQAISA----THCCECGDPIDERRRLVVQGCRTCAS 12
D D A++ E + R A+ R + A T C ECGDPI E RR V G R C +
Sbjct: 2 DAADIATQREHILRLEALARNRASRPVHRAGPRPTRCEECGDPIPEARRAAVPGVRLCVT 61
Query: 11 CQE 3
CQ+
Sbjct: 62 CQQ 64
>UniRef50_P41059 Cluster: Uncharacterized 8.5 kDa protein in gpA
5'region; n=12; root|Rep: Uncharacterized 8.5 kDa
protein in gpA 5'region - Bacteriophage 186
Length = 75
Score = 46.8 bits (106), Expect = 6e-04
Identities = 24/61 (39%), Positives = 30/61 (49%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
MAD +D A E+ R I R +SA C EC PI E RR + G + C +CQ
Sbjct: 1 MADAMDLAQLREQEDRERHISNARSRRHEVSAFICEECDAPIPEARRRAIPGVQCCVTCQ 60
Query: 5 E 3
E
Sbjct: 61 E 61
>UniRef50_Q88IG2 Cluster: C4-type zinc finger protein, DksA/TraR
family; n=1; Pseudomonas putida KT2440|Rep: C4-type zinc
finger protein, DksA/TraR family - Pseudomonas putida
(strain KT2440)
Length = 72
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/60 (38%), Positives = 30/60 (50%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
MADI D A++ + + + R + S C CG I E RRL VQGC+ C CQ
Sbjct: 1 MADIADLANDRAQWHLDLVLSARLPAPECESLEDCVGCGGSIPEPRRLAVQGCQRCIECQ 60
>UniRef50_Q8W742 Cluster: Orf26; n=5; root|Rep: Orf26 - Vibrio phage
K139
Length = 69
Score = 46.4 bits (105), Expect = 8e-04
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Frame = -1
Query: 179 DIIDSASEIEELQRNTAIKMRRLNHQAI----SATHCCECGDPIDERRRLVVQGCRTCAS 12
D+ID A++ E + A+ R S THC EC DPI + R+ V+GC+ C
Sbjct: 2 DVIDDAAKTEAKFQQMALANHRARAMQTAYLPSRTHCLECDDPIPKERQEKVKGCQYCTP 61
Query: 11 CQ 6
CQ
Sbjct: 62 CQ 63
>UniRef50_A4SL94 Cluster: Putative phage protein; n=2; root|Rep:
Putative phage protein - Aeromonas salmonicida (strain
A449)
Length = 69
Score = 45.6 bits (103), Expect = 0.001
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Frame = -1
Query: 179 DIIDSASE--IEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
D ID A++ L N A ++ + ++Q +S HC EC DPI E RR V G R C CQ
Sbjct: 2 DDIDRANQHAARMLTTNLARQVGKGHYQGMSLHHCEECDDPIPEARRHHVPGVRLCVPCQ 61
>UniRef50_Q2CDV5 Cluster: C4-type zinc finger protein, DksA/TraR
family protein; n=4; Rhodobacteraceae|Rep: C4-type zinc
finger protein, DksA/TraR family protein - Oceanicola
granulosus HTCC2516
Length = 100
Score = 45.2 bits (102), Expect = 0.002
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -1
Query: 95 SATHCCECGDPIDERRRLVVQGCRTCASCQE 3
S THC EC +PI ERRR + G + C CQ+
Sbjct: 47 SLTHCAECDEPIPERRRAAIPGVKLCVDCQQ 77
>UniRef50_Q7N7S5 Cluster: Similar to unknown protein; n=1;
Photorhabdus luminescens subsp. laumondii|Rep: Similar
to unknown protein - Photorhabdus luminescens subsp.
laumondii
Length = 83
Score = 44.8 bits (101), Expect = 0.002
Identities = 18/48 (37%), Positives = 28/48 (58%)
Frame = -1
Query: 146 LQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQE 3
L+ A+ R ++ +S +C CGD IDE+RR ++ G + C CQE
Sbjct: 18 LEEQIAVVRREMHTGRVSLKYCEGCGDRIDEQRRQILPGVQLCVGCQE 65
>UniRef50_Q9R2Q7 Cluster: C4-type zinc finger protein; n=5;
Pseudomonas|Rep: C4-type zinc finger protein -
Pseudomonas aeruginosa
Length = 66
Score = 44.0 bits (99), Expect = 0.004
Identities = 21/61 (34%), Positives = 31/61 (50%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
MAD+ D A+E+ + + + R SA C +CG+PI + RR GC C CQ
Sbjct: 1 MADLADHANELVLARLDGLLAARPALAIRESAEDCEDCGEPIPQARRRAAPGCSRCIDCQ 60
Query: 5 E 3
+
Sbjct: 61 D 61
>UniRef50_Q1GJ67 Cluster: Transcriptional regulators TraR/DksA
family; n=12; Proteobacteria|Rep: Transcriptional
regulators TraR/DksA family - Silicibacter sp. (strain
TM1040)
Length = 89
Score = 41.9 bits (94), Expect = 0.017
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = -1
Query: 152 EELQRNTAIKMRRLNHQAISA----THCCECGDPIDERRRLVVQGCRTCASCQE 3
E+++ + + ++ R+N + A THC +C + I E RRL + G + C CQE
Sbjct: 13 EQIEASISDELARMNARRAPAGESLTHCADCEEEIPEARRLAIPGVKLCIDCQE 66
>UniRef50_Q0HYS5 Cluster: Transcriptional regulators, TraR/DksA
family; n=3; Shewanella|Rep: Transcriptional regulators,
TraR/DksA family - Shewanella sp. (strain MR-7)
Length = 68
Score = 41.9 bits (94), Expect = 0.017
Identities = 17/30 (56%), Positives = 19/30 (63%)
Frame = -1
Query: 95 SATHCCECGDPIDERRRLVVQGCRTCASCQ 6
SAT C ECGD I E RR + G R C +CQ
Sbjct: 33 SATDCAECGDEIPEGRRQAILGVRLCVTCQ 62
>UniRef50_A1VE28 Cluster: Transcriptional regulator, TraR/DksA
family; n=6; Desulfovibrio|Rep: Transcriptional
regulator, TraR/DksA family - Desulfovibrio vulgaris
subsp. vulgaris (strain DP4)
Length = 78
Score = 41.9 bits (94), Expect = 0.017
Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQA-------ISATHCC-ECGDPIDERRRLVVQG 30
MADI D AS+ E R AI R N A I CC ECG+ I E R + G
Sbjct: 6 MADIFDQASDYEARDREAAISAAR-NRLASGPGPEWIDGKPCCRECGEVIPEARVKALPG 64
Query: 29 CRTCASCQE 3
C C C E
Sbjct: 65 CGLCRECAE 73
>UniRef50_A2I309 Cluster: Conjugative transfer protein; n=1; Vibrio
phage VP882|Rep: Conjugative transfer protein - Vibrio
phage VP882
Length = 73
Score = 41.5 bits (93), Expect = 0.023
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLN-HQAI-SATHCCECGDPIDERRRLVVQGCRTCAS 12
M+DI D A ++ E ++ R+ N + AI SA HC +C I E RR + G R C
Sbjct: 1 MSDIADQAQDVIEQHLTASLANRKHNINPAIPSAKHCDDCESEIPEARRRSLPGVRLCVD 60
Query: 11 C 9
C
Sbjct: 61 C 61
>UniRef50_Q125W5 Cluster: Transcriptional regulators, TraR/DksA
family; n=1; Polaromonas sp. JS666|Rep: Transcriptional
regulators, TraR/DksA family - Polaromonas sp. (strain
JS666 / ATCC BAA-500)
Length = 79
Score = 39.9 bits (89), Expect = 0.070
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 10/71 (14%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQ--------AISATHCCE--CGDPIDERRRLVV 36
M D D A + E++ R+ A++ + L Q +SA C CG+PI E+RR +
Sbjct: 1 MPDDFDRAQQTEQMFRDDALRDQALRFQPGDPTRWQGLSALRCLYDGCGEPIPEQRRKAL 60
Query: 35 QGCRTCASCQE 3
G + C CQ+
Sbjct: 61 PGVKFCVECQQ 71
>UniRef50_Q0BZ89 Cluster: C4-type zinc finger protein, DksA/TraR
family; n=2; Alphaproteobacteria|Rep: C4-type zinc
finger protein, DksA/TraR family - Hyphomonas neptunium
(strain ATCC 15444)
Length = 87
Score = 39.9 bits (89), Expect = 0.070
Identities = 19/51 (37%), Positives = 25/51 (49%)
Frame = -1
Query: 158 EIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
+IE+ R+ R I C ECG+ I RR+ + G RTC SCQ
Sbjct: 14 QIEDSVRDALAAARARMPSGIGLEECEECGETIPLARRMALIGARTCVSCQ 64
>UniRef50_Q9MC51 Cluster: Orf77; n=1; Pseudomonas phage D3|Rep:
Orf77 - Bacteriophage D3
Length = 67
Score = 39.9 bits (89), Expect = 0.070
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = -1
Query: 179 DIIDSASEIEELQRNTAIKM-RRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQE 3
DI+D A++ E R A ++ R+ + S C +CG+ I RR +V G R C SCQE
Sbjct: 2 DIVDIANDYAE--RELAERLYSRVKYVGESLYECEDCGEEIPVARRELVPGVRKCLSCQE 59
>UniRef50_Q8H9Q7 Cluster: ORF8; n=1; Vibrio phage VHML|Rep: ORF8 -
Vibrio phage VHML
Length = 75
Score = 39.9 bits (89), Expect = 0.070
Identities = 18/58 (31%), Positives = 30/58 (51%)
Frame = -1
Query: 182 ADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASC 9
AD +D A+ + + ++ R + +SA C ECG I ++RR ++QG C C
Sbjct: 6 ADPLDRAAALSQAHLEVSLS-RIKKFEGVSAHECVECGSEIPKKRRELLQGVTDCVDC 62
>UniRef50_A1JNK3 Cluster: Hypothetical 8.2 kDa protein in gpa
5'region; n=2; Yersinia|Rep: Hypothetical 8.2 kDa
protein in gpa 5'region - Yersinia enterocolitica
serotype O:8 / biotype 1B (strain 8081)
Length = 74
Score = 39.5 bits (88), Expect = 0.093
Identities = 21/61 (34%), Positives = 29/61 (47%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
M D++D A E +E+ I R SA C C I E+RR+ V G C +CQ
Sbjct: 1 MPDLMDIAQERQEMLLAMQIAKARSKPITASAFICASCEAEIPEQRRITVPGVIFCVACQ 60
Query: 5 E 3
+
Sbjct: 61 Q 61
>UniRef50_Q5QUB9 Cluster: DnaK suppressor protein; n=6;
Gammaproteobacteria|Rep: DnaK suppressor protein -
Idiomarina loihiensis
Length = 88
Score = 39.1 bits (87), Expect = 0.12
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -1
Query: 152 EELQRNTAIKMRRLNHQAI---SATHCCECGDPIDERRRLVVQGCRTCASCQ 6
E++ +T +++R+ + S C ECG+PI E RR + G R C CQ
Sbjct: 13 EQIDASTEDEVKRVRSKLTGGESLEFCEECGEPIPEARRKAIPGVRLCVECQ 64
>UniRef50_P41065 Cluster: Protein traR; n=11; root|Rep: Protein traR
- Escherichia coli (strain K12)
Length = 73
Score = 39.1 bits (87), Expect = 0.12
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKM--RRLNHQAISATHCCECGDPIDERRRLVVQGCRTCAS 12
M+D D A + E T I +++N I C CG+PI E RR + G C
Sbjct: 1 MSDEADEAYSVTEQLTMTGINRIRQKINAHGIPVYLCEACGNPIPEARRKIFPGVTLCVE 60
Query: 11 CQ 6
CQ
Sbjct: 61 CQ 62
>UniRef50_Q5DZI6 Cluster: Zinc finger protein; n=22;
Proteobacteria|Rep: Zinc finger protein - Vibrio
fischeri (strain ATCC 700601 / ES114)
Length = 89
Score = 38.3 bits (85), Expect = 0.21
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 113 LNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
L+H+ +C ECG+ I E RR ++ G C CQ
Sbjct: 30 LHHEHNDTNYCLECGELIPEARRNIIPGVELCVECQ 65
>UniRef50_Q1GXR9 Cluster: Transcriptional regulators, TraR/DksA
family; n=1; Methylobacillus flagellatus KT|Rep:
Transcriptional regulators, TraR/DksA family -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 72
Score = 37.9 bits (84), Expect = 0.28
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Frame = -1
Query: 170 DSASEIEELQRNTAIKMRRLN--HQAISATHCCECGDPIDERRRLVVQGCRTCASCQE 3
D A E+E +R I ++L +HC +CG+ I++ RR ++G + C CQE
Sbjct: 5 DWAQEMELREREAGIAEKQLQALRSGPGYSHCKDCGEEIEKERR-AIKGVKRCIFCQE 61
>UniRef50_Q9ZC27 Cluster: Similar to AF063097_37 Bacteriophage P2
Orf82; n=5; Enterobacteriaceae|Rep: Similar to
AF063097_37 Bacteriophage P2 Orf82 - Yersinia pestis
Length = 69
Score = 37.5 bits (83), Expect = 0.37
Identities = 22/61 (36%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAI-SATHCCECGDPIDERRRLVVQGCRTCASC 9
M D ID E I+ RL S HC CG I E+RR + G TC C
Sbjct: 1 MPDEIDRDQAFNERCLEALIEQSRLRPTPTPSLQHCRFCGKAIPEKRRQTLPGVTTCTDC 60
Query: 8 Q 6
Q
Sbjct: 61 Q 61
>UniRef50_Q65AH5 Cluster: TraR protein; n=3; Enterobacteriaceae|Rep:
TraR protein - Yersinia pestis
Length = 88
Score = 37.1 bits (82), Expect = 0.50
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNH--QAISATHCCECGDPIDERRRLVVQGCRTCAS 12
MAD +D E +EL I+ R + S C CG+ I RR+ + G RTC
Sbjct: 15 MADELDLLQEQDELLNQLHIQAARQRSCLEGKSRKRCECCGNRIPLRRQQAIPGVRTCTE 74
Query: 11 CQ 6
CQ
Sbjct: 75 CQ 76
>UniRef50_A3EVE8 Cluster: Putative uncharacterized protein; n=1;
Leptospirillum sp. Group II UBA|Rep: Putative
uncharacterized protein - Leptospirillum sp. Group II
UBA
Length = 52
Score = 36.3 bits (80), Expect = 0.86
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -1
Query: 116 RLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQE 3
RL + SA C +CG I +RR +V G +TC CQ+
Sbjct: 5 RLQPKGDSALFCSDCGGVIPVKRRELVPGVKTCILCQK 42
>UniRef50_A0HAW8 Cluster: Transcriptional regulators, TraR/DksA
family; n=1; Comamonas testosteroni KF-1|Rep:
Transcriptional regulators, TraR/DksA family - Comamonas
testosteroni KF-1
Length = 76
Score = 35.9 bits (79), Expect = 1.1
Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIK--MRRLN----HQAISATHCCECGDPIDERRRLVVQGCR 24
M D D A E R A++ RR +A SAT C CG I E RR V GC+
Sbjct: 1 MTDFFDRAQARELQLREDALRDQTRRAGLSGKTEADSATECA-CGALIPEARRKAVPGCQ 59
Query: 23 TCASCQ 6
C C+
Sbjct: 60 RCVKCE 65
>UniRef50_Q06424 Cluster: Uncharacterized 8.2 kDa protein in gpA
5'region; n=4; root|Rep: Uncharacterized 8.2 kDa protein
in gpA 5'region - Bacteriophage P2
Length = 74
Score = 35.9 bits (79), Expect = 1.1
Identities = 20/60 (33%), Positives = 23/60 (38%)
Frame = -1
Query: 185 MADIIDSASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQ 6
M D +D E + I R+ H SA C EC PI RR C SCQ
Sbjct: 1 MPDNVDFIQEQQAELLERQINAARVKHCGASALVCEECDAPIPAARRAAYPSATRCVSCQ 60
>UniRef50_A4XZG1 Cluster: Transcriptional regulator, TraR/DksA
family; n=1; Pseudomonas mendocina ymp|Rep:
Transcriptional regulator, TraR/DksA family -
Pseudomonas mendocina ymp
Length = 72
Score = 35.5 bits (78), Expect = 1.5
Identities = 25/64 (39%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Frame = -1
Query: 185 MADIIDSASE--IEELQRNTAIKMRRLNHQAISATHCCECGDPID-ER-RRLVVQGCRTC 18
MAD +D A++ ++EL R A L Q A C +CGDPI ER + L C C
Sbjct: 1 MADAVDIANDRMLDELDRRLA--NHALARQCPVAEECEDCGDPIPFERVQALAKLPCLRC 58
Query: 17 ASCQ 6
CQ
Sbjct: 59 VECQ 62
>UniRef50_Q7Q3X7 Cluster: ENSANGP00000011592; n=2; Culicidae|Rep:
ENSANGP00000011592 - Anopheles gambiae str. PEST
Length = 1981
Score = 35.5 bits (78), Expect = 1.5
Identities = 25/77 (32%), Positives = 38/77 (49%)
Frame = +2
Query: 230 MRIIKKEPELPDDFAFHVHRSLKTPFNMPIARLK*VGVNPISVTVSRCFFSTLRQMSSTF 409
++II+K L +DF F++H S +P N+ +GVNP S T + ST+
Sbjct: 828 LQIIEKALNLQEDF-FNMHLSTPSPVNLNGINKLLLGVNPRSGTANHMLNIMKHITYSTW 886
Query: 410 LSGNCCLAFFDFRISLT 460
L GN +A I +T
Sbjct: 887 LPGNSLVALRILSIIMT 903
>UniRef50_P41039 Cluster: Uncharacterized protein ybiI; n=32;
Gammaproteobacteria|Rep: Uncharacterized protein ybiI -
Escherichia coli (strain K12)
Length = 88
Score = 35.1 bits (77), Expect = 2.0
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 95 SATHCCECGDPIDERRRLVVQGCRTCASCQE 3
S C ECG PI + RR + G R C CQ+
Sbjct: 35 SLDECEECGAPIPQARREAIPGVRLCIHCQQ 65
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 774,166,841
Number of Sequences: 1657284
Number of extensions: 14990586
Number of successful extensions: 37268
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 36008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37261
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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