Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0434.Seq
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces...    29   0.99 
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    26   5.3  
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   5.3  
SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint compone...    26   5.3  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    26   7.0  
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos...    25   9.3  
SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|ch...    25   9.3  
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar...    25   9.3  
SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces pombe...    25   9.3  

>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 289

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = -1

Query: 152 EELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVVQGCRTCASCQE 3
           E+ +R   +++  LN    +A  C EC     + +   +  CR C +C+E
Sbjct: 93  EQEERQKKLRLAPLNLDPETAPKCFECDSIELDTKYFDIFHCRVCHTCRE 142


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 375 KHRETVTLMGFTPTHLSLAIGMLNGVFKER 286
           K+   +  MG +P   +L +GM NG   +R
Sbjct: 289 KYSGPILSMGLSPDSCNLVVGMSNGTLSQR 318


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)
 Frame = -2

Query: 376 EAPRNGNADGIHTDSFKPGNRH--VKRRL*GTMNMKSKIIRELRLLFYYSHSPSSVLTNS 203
           E+  N NA+ +H+        H         T    S  +  L LL     +P++ L N 
Sbjct: 544 ESCNNPNANSVHSAQLLQALLHPSATETKEETPKKTSDSLSLLTLLKSGLPTPANDLQNK 603

Query: 202 SGINERWQTSLIQHQK*KNYS 140
           S  NER  +S ++  + KNYS
Sbjct: 604 SQNNERKASSQVKELEVKNYS 624


>SPCC895.07 |alp14|mtc1|Mad2-dependent spindle checkpoint component
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 531 CAYACRHGLVQ*HLSRKTPFA-ALPVRLILKSKKARQQFPDKNVDDICRSVLKKHRETVT 355
           CA AC  G+       ++  A AL V + L  ++A  Q+    +DDI +S ++   ET T
Sbjct: 446 CAKACVPGVSDTFEPVRSAAAEALGVLMKLVGERAINQYLSP-LDDIRKSKIRSFYETAT 504

Query: 354 LMGFTPTHLS 325
           +    PT  S
Sbjct: 505 VKAKAPTKKS 514


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +2

Query: 335 VGVNPISVTVSRCFFSTLRQMSSTFLSGNCCLAFFDFRISLTGN 466
           +GV     T    FFST  Q+S   ++ NC ++  D RI  +GN
Sbjct: 157 LGVTIDEKTGELSFFSTGIQISVQGINVNCIVSSEDGRIFFSGN 200


>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 153 RRITAQHSNKNAPPEPPGYICH 88
           RRI A   +K   P PPGYIC+
Sbjct: 168 RRIAASVPDK---PPPPGYICY 186


>SPBC530.05 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 235 SHSPSSVLTNSSGINERWQTSLIQHQK*KNYS 140
           S+SPSS+  NS  +N    + L  HQ  +N S
Sbjct: 646 SNSPSSIFDNSGYLNSLNNSILQMHQNLQNSS 677


>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 151 SISDAESMMSAIFH*SLNC-WLI 216
           SI  +E MMS +FH  L+C W I
Sbjct: 432 SIDHSEKMMSPVFHQFLDCVWQI 454


>SPBC26H8.12 |||cytochrome c heme lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +2

Query: 2   PPG-NLHKSDNPERPGVFVHLSDRHTHNNE 88
           PPG  +HK+ N    G F +L  R   N+E
Sbjct: 85  PPGCPMHKASNENSTGFFSNLFGREKQNSE 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,228
Number of Sequences: 5004
Number of extensions: 62073
Number of successful extensions: 191
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)