Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0434.Seq
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)                   30   2.4  
SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)              29   5.6  
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_22616| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  

>SB_21973| Best HMM Match : XPG_N (HMM E-Value=0.013)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/48 (31%), Positives = 29/48 (60%)
 Frame = -2

Query: 736 TSIEMAHSLAQIGIRFVPIPVETDEEFHTLAASLSQKLEMMVAKAEAD 593
           +++ ++ ++  IG++FV I  E DEE     ASL++K +  V   ++D
Sbjct: 114 SALVLSQAMRDIGVKFVRIDCEADEEI----ASLAKKFQCPVLSDDSD 157


>SB_39160| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 379

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 677 WYWHKPDSNLSKAMC 721
           WYW+ PD NL++ +C
Sbjct: 121 WYWNHPDENLTQWLC 135


>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
          Length = 369

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -1

Query: 563 CIFLAAGFIFCVLMLA 516
           C+ L AGF++CVL+LA
Sbjct: 278 CVVLPAGFLYCVLVLA 293


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/54 (35%), Positives = 25/54 (46%)
 Frame = -1

Query: 707 SNWNQVCANTSRNRRRISYVSRIPFTKAGNDGGESRSR*ERPGMTTTECIFLAA 546
           SN N      S  R+R S   R P     NDGG   S+ E+PG   ++   L+A
Sbjct: 525 SNPNATSPRPSILRKRTSEGLRKPTIVPYNDGGAPSSQAEKPGSPRSDTTTLSA 578


>SB_22616| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -3

Query: 588 ETRYDNHGMHFSGSGLHILCAYACRHGLVQ*HLSRKTPFAALP 460
           + RY+N    +S     + C +  R  +   H  RK PF+++P
Sbjct: 20  QKRYENDSKLYSACVDPVFCMFTSRAQIQSCHRFRKVPFSSVP 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,488,123
Number of Sequences: 59808
Number of extensions: 488013
Number of successful extensions: 1206
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)