Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0434.Seq
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.2  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    22   5.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 486 RKTPFAALPVRLILKSKKARQQFPDKNVDDIC 391
           RKT     PV   + S+K +++  +KN++D C
Sbjct: 795 RKTATTTQPV---ISSRKEQKKSEEKNINDHC 823


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/39 (33%), Positives = 17/39 (43%)
 Frame = -3

Query: 492 LSRKTPFAALPVRLILKSKKARQQFPDKNVDDICRSVLK 376
           L RK PFA L    I+       +  D N+DD  +   K
Sbjct: 248 LFRKLPFAGLHSHTIIYLSAKGHRPIDDNIDDEFKGTYK 286


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 477 PFAALPVRLILKSKKARQQFP 415
           PF A  V  +LK+K    +FP
Sbjct: 301 PFTAEEVNYMLKAKNMENRFP 321


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 213,586
Number of Sequences: 438
Number of extensions: 3938
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)