Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0434.Seq
         (782 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g08190.1 68414.m00905 vacuolar assembly protein, putative (VP...    29   3.5  
At1g47560.1 68414.m05279 expressed protein                             28   8.0  
At1g47550.1 68414.m05278 expressed protein                             28   8.0  

>At1g08190.1 68414.m00905 vacuolar assembly protein, putative
           (VPS41) 99.8% identical to Vacuolar assembly protein
           VPS41 homolog (SP:P93043) [Arabidopsis thaliana];
           similar to vacuolar assembly protein vps41 GI:1835787
           from [Lycopersicon esculentum]
          Length = 980

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 167 SASEIEELQRNTAIKMRRLNHQAISATHCCECGDPIDERRRLVV 36
           S S+   + ++ +IKM  +  +    T CC C DP+  R   VV
Sbjct: 860 SFSQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVV 903


>At1g47560.1 68414.m05279 expressed protein
          Length = 887

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 513 HGLVQ*HLSRKTPFAALPVRLILKSKKAR--QQFPDKNVDDICRSVLKKHRETVTLMGFT 340
           HG+ + +LS +   AA  VRL+L   ++R   QF    VD+ C  + +K+   V  MG  
Sbjct: 615 HGITERYLSGQKADAAGFVRLLLGDLESRISMQF-SHFVDEACHQI-EKNERNVRQMGVL 672

Query: 339 P 337
           P
Sbjct: 673 P 673


>At1g47550.1 68414.m05278 expressed protein
          Length = 887

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
 Frame = -3

Query: 513 HGLVQ*HLSRKTPFAALPVRLILKSKKAR--QQFPDKNVDDICRSVLKKHRETVTLMGFT 340
           HG+ + +LS +   AA  VRL+L   ++R   QF  + VD+ C  + +++   V  MG  
Sbjct: 618 HGITERYLSGQKADAAGFVRLLLGDLESRVSMQF-SRFVDEACHQI-ERNERNVRQMGVL 675

Query: 339 P 337
           P
Sbjct: 676 P 676


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,747,205
Number of Sequences: 28952
Number of extensions: 332726
Number of successful extensions: 880
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)