Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0431.Seq
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.8  
SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyc...    28   1.8  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    28   1.8  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    27   2.3  
SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   4.1  
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E...    26   5.4  
SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyc...    25   9.4  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 42  DNNSDGNKRPEEIWSWGYVDNTKSNNQSATT 134
           D  SD  +R   +W++ Y+D   S + +ATT
Sbjct: 752 DELSDSQQRKLRVWAFRYLDTVVSRSGTATT 782


>SPBPB2B2.01 |||amino acid permease, unknown 12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
 Frame = +2

Query: 260 RRLDKCFKLHNNVQPSFAIGGRNTLPGEFPHMGAIGWQAVVGSWIFKC-----GGS---L 415
           RR    FK+  N Q S   G +  L      M  IG     G W+        GG+   L
Sbjct: 59  RRFINGFKIEKNQQDSAGQGLKRRLKSRHIQMIGIGGAIGTGVWVGSSKSLYRGGAASVL 118

Query: 416 ISNKFILTAAHCTSFSLKDTSIADP 490
           I    + T   CT ++L + ++A P
Sbjct: 119 IDYCIVGTMVFCTVYALGELAVAFP 143


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +2

Query: 386 SWIFKCGGSLISNKFILTAAHCTSFSLKDTSIADPIPKI 502
           SW +KC  S+  N ++L      S ++ DTS  D +  +
Sbjct: 238 SWTYKCTSSIDGNAYVLKRLQDCSINI-DTSTVDKLKNV 275


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
 Frame = +1

Query: 547 GIIPEDR--EIVNIIKHPSYNP-PKKYFDIA 630
           G+ P +R  E+++   HP Y P  ++YFDIA
Sbjct: 454 GLSPTERAREVIDKCAHPDYKPLLREYFDIA 484


>SPBC6B1.03c |||Pal1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 272

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +3

Query: 45  NNSDGNKRPEEIWSWGYVDNTKSNNQSATTEEP 143
           NNS G ++ EE    G  DN  SN  S+T E P
Sbjct: 198 NNSKGVEKSEENED-GVTDNDSSNVNSSTNESP 229


>SPAC4H3.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 391

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
 Frame = +1

Query: 604 PPKKYFDIALMELDKDVFFSKYV-QPACLWPHFDLSSLGKKASATGW 741
           PP+K   +++ + DKD FF   +     +  HFD+      A  T W
Sbjct: 253 PPRKRITLSINQQDKDEFFDSLINNKKEVRRHFDIVMEFSDAPDTKW 299


>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
           EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = -3

Query: 641 NSMRAMSKYFFGGL*DGCLMIFTISLSSGIMPSFTSLSKIY 519
           NS +A S   F G    CL +  IS +SG++  FT  ++ Y
Sbjct: 2   NSAKATS-LLFQGFRKNCLRLNRISFASGLINRFTVPARTY 41


>SPBC13A2.04c |||PTR family peptide transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -3

Query: 152 AHFRFFGGCRLVIGFCIVHIAPRPYFFWPFISIRVVITRTLQCVVFWV 9
           A F F      ++  CI   A  P   W +  I   +T  +  ++FWV
Sbjct: 514 ALFLFTNAFGAILSICISSTAVNPKLTWMYTGI--AVTAFIAGIMFWV 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,656,026
Number of Sequences: 5004
Number of extensions: 83796
Number of successful extensions: 266
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)