Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0431.Seq
(793 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0178 - 1235546-1235756,1235869-1235945,1236194-1236347,123... 31 1.4
02_01_0740 - 5511434-5511547,5511952-5512023,5512106-5512300,551... 30 1.8
03_06_0142 + 31957117-31958520 30 2.4
03_03_0083 + 14328148-14328381,14329275-14329523 30 2.4
11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460 29 3.2
02_02_0547 + 11399769-11399852,11399906-11400088,11400474-114005... 29 3.2
08_01_0532 - 4611650-4612706,4613405-4613757 29 4.2
02_03_0262 + 17015383-17015619,17017932-17018879 29 4.2
02_01_0746 + 5554686-5556179 29 4.2
01_05_0291 - 20515206-20516262,20516961-20517313 29 4.2
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938... 28 7.4
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 28 7.4
12_02_1265 - 27435096-27437675 28 9.8
12_02_1162 + 26612571-26613986,26614095-26614142 28 9.8
03_06_0511 - 34425605-34425850,34426120-34426284,34426365-344266... 28 9.8
03_04_0179 + 18161696-18163361,18163552-18163664 28 9.8
>05_01_0178 -
1235546-1235756,1235869-1235945,1236194-1236347,
1237067-1237216,1237363-1237484,1237806-1237910,
1237986-1238213
Length = 348
Score = 30.7 bits (66), Expect = 1.4
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +3
Query: 159 YNPTVP-NFEKPGRRISEVKCYEYLWNINFREEVIEDWTNALSCIIMSSHHLLLGDATHY 335
Y PTVP +K R+ +V CY+YLW+ E+ + N S + +LL D Y
Sbjct: 188 YKPTVPLEAQKRNGRL-QVMCYKYLWDNLISEKFPAE--NFFSYFDLDPGYLLSDDIKQY 244
Query: 336 L 338
+
Sbjct: 245 I 245
>02_01_0740 -
5511434-5511547,5511952-5512023,5512106-5512300,
5512408-5512611,5512690-5512848,5513144-5513249,
5513387-5513554,5513644-5513834,5514410-5514634,
5514818-5514935,5515023-5515195,5515280-5515327,
5515484-5515589,5515697-5515802,5516211-5516332,
5516661-5516741,5516844-5516934,5517036-5517132,
5517287-5517919
Length = 1002
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 9 HPENDALQGSSDNNSDGNKRPEEIWSWGYVDNTKSNNQSATTEEPE 146
H + L + DG + E + SWG D+ N S T EE E
Sbjct: 90 HHHSVLLAAADSEEEDGEEGEESVASWGVPDDCYYGNFSDTLEEEE 135
>03_06_0142 + 31957117-31958520
Length = 467
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Frame = -2
Query: 441 AVSINLLLINDPPHLNIQDPTTACQPMA---PMCGNSPGNVLRPP 316
AVS L ++DPP L ++DP +A A + G G+++ PP
Sbjct: 99 AVSYKLARLDDPPVLIVEDPQSAAGGAAAPFAISGKFLGHIVEPP 143
>03_03_0083 + 14328148-14328381,14329275-14329523
Length = 160
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -2
Query: 105 YCPHSPKTIFLLAVYFHQSCYH*NLAVRRFLGA 7
Y P SP T L Y+H C H VR +GA
Sbjct: 23 YTPPSPSTCGLKVGYYHDKCPHAEAIVRGAVGA 55
>11_01_0288 + 2151552-2151581,2151818-2151893,2152019-2153460
Length = 515
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +2
Query: 317 GGRNTLP-GEFPHMGAIGWQAVVGSWIFKCGGSLISNKFILTAA 445
GG T+P G PHMGA Q + + ++ GG + S +L AA
Sbjct: 378 GGPMTMPMGHHPHMGAGAVQGMPPAAFYQGGGGMPSGPEMLQAA 421
>02_02_0547 +
11399769-11399852,11399906-11400088,11400474-11400578,
11400690-11400773,11400938-11401053,11401158-11401259,
11401339-11401452,11401540-11401596,11401681-11401873,
11402261-11402335,11402425-11402460,11402509-11402574,
11402575-11402688
Length = 442
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
Frame = +3
Query: 6 MHPENDALQGSSDNNSDGNKRPEEIWSWGYVDNTKSNNQSATTEE-PEVCKPYNPTVPNF 182
+H + + D NS + +W + NN +T+EE P++ P NP
Sbjct: 42 LHFPSSIISYIEDRNSGITTQTLLNHAWASANRHNKNNSDSTSEEVPKIYVPTNPKGAER 101
Query: 183 EKPGRRISEVKCY-EYLW 233
PG +SE + LW
Sbjct: 102 LPPGIVVSETDLFPRRLW 119
>08_01_0532 - 4611650-4612706,4613405-4613757
Length = 469
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 PENDALQGSSDNNSDGNKRPEEIWSW 89
PE + LQG+ D N +GN R E+ W
Sbjct: 155 PEVEILQGNDDGNGNGNVRTEKRILW 180
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 29.1 bits (62), Expect = 4.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +3
Query: 12 PENDALQGSSDNNSDGNKRPEEIWSWGYVDNTKSNNQ 122
P + SDNN D +E SW V+N + N+Q
Sbjct: 91 PFRASFVSDSDNNDDDQMEVDEDKSWNQVENEEVNDQ 127
>02_01_0746 + 5554686-5556179
Length = 497
Score = 29.1 bits (62), Expect = 4.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = -2
Query: 408 PPHLNIQDPTTACQPMAPMCGNSPGNVLRPPIANDG 301
PPHLN+ T + P+ + G +++ PP + G
Sbjct: 427 PPHLNLHGVTVSRSPLRGLVGLHGSSLMTPPPTDSG 462
>01_05_0291 - 20515206-20516262,20516961-20517313
Length = 469
Score = 29.1 bits (62), Expect = 4.2
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 12 PENDALQGSSDNNSDGNKRPEEIWSW 89
PE + LQG+ D N +GN R E+ W
Sbjct: 155 PEVEILQGNDDGNGNGNVRTEKRILW 180
>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
9387180-9387325,9387416-9387572,9387720-9387778,
9388204-9388360,9389001-9389150,9389280-9389416,
9390071-9390217,9390292-9390393,9390742-9390799,
9391997-9392034,9392124-9392250,9392320-9392493,
9393125-9393256,9393940-9394049,9394752-9394812,
9395036-9395213,9395326-9395531,9395796-9395915,
9396496-9396594,9396983-9397204,9397482-9397621,
9397741-9397852,9398021-9398071,9398151-9398240,
9398397-9398567,9398663-9398815,9399774-9399950,
9400045-9400182,9400295-9400365,9400739-9400838,
9401324-9401380,9401469-9401525,9401619-9401699,
9401782-9401864,9401975-9402110
Length = 1632
Score = 28.3 bits (60), Expect = 7.4
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 410 SLISNKFILTAAHCTSFSLKDTSIADP 490
+L+SN F+L C FS +D SIA P
Sbjct: 1575 NLVSNSFLLDDDLCIPFSTEDLSIAIP 1601
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 36 SSDNNSDGNKRPEEIWSWGYVDNTKSNNQSATTEEP 143
+SDN S GNK + S DNT++ ++T+EP
Sbjct: 1819 ASDNKSFGNKNLAGLASGDVFDNTEAIAGQSSTDEP 1854
>12_02_1265 - 27435096-27437675
Length = 859
Score = 27.9 bits (59), Expect = 9.8
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 7/55 (12%)
Frame = +3
Query: 36 SSDNNSDGNKRPEEIWSWGYV-------DNTKSNNQSATTEEPEVCKPYNPTVPN 179
S+ NN N+ + S+ Y N KS+NQ + PE PYNP+V N
Sbjct: 149 STSNNGGTNQASQMATSYSYQPLSDAQPSNIKSHNQHSL---PEAKMPYNPSVQN 200
>12_02_1162 + 26612571-26613986,26614095-26614142
Length = 487
Score = 27.9 bits (59), Expect = 9.8
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = +3
Query: 36 SSDNNSDGNKRPEEIWSWGYVDNTKSNNQSATTEEPEVCKPYNPTV 173
++++ DG P ++S+GY + ++ Q PE+ K YNP V
Sbjct: 43 TTESAQDGQDPPAGVYSYGYFSGSGNDPQVQGHFVPEIQK-YNPYV 87
>03_06_0511 -
34425605-34425850,34426120-34426284,34426365-34426629,
34427805-34427884,34428051-34428149,34428387-34428644,
34429081-34429215
Length = 415
Score = 27.9 bits (59), Expect = 9.8
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -3
Query: 221 IAFDFTDSSSWFLKIGYCWIIRFAHFRFFGGCRLVIGFCIVHI 93
I+FD + + L GY I+RFAHF G V + +VH+
Sbjct: 306 ISFDMEKAQNC-LPRGYDDIMRFAHFLTTKGIDSVTAYALVHL 347
>03_04_0179 + 18161696-18163361,18163552-18163664
Length = 592
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = -3
Query: 686 RHAGCTYLLKKTSL--SNSMRAM-SKYFFGGL*DGCLMIFTISLSSGIMPS-FTSLS 528
R A YL K + S + AM S Y GL + L +FT++L +GI+P+ FT S
Sbjct: 288 RLADAVYLFKGMATWDSETCNAMISGYARSGLMEQALGLFTMALQNGILPTGFTFAS 344
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,929,267
Number of Sequences: 37544
Number of extensions: 537464
Number of successful extensions: 1519
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1519
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -