Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0431.Seq
         (793 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    42   7e-06
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    25   0.81 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.3  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.5  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 41.9 bits (94), Expect = 7e-06
 Identities = 22/50 (44%), Positives = 28/50 (56%)
 Frame = +2

Query: 302 PSFAIGGRNTLPGEFPHMGAIGWQAVVGSWIFKCGGSLISNKFILTAAHC 451
           PS  +GG NT   EFP M  I      G     CG ++IS +++LTAAHC
Sbjct: 158 PSRIVGGTNTGINEFPMMAGIKRTYEPG---MICGATIISKRYVLTAAHC 204



 Score = 41.5 bits (93), Expect = 9e-06
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
 Frame = +1

Query: 571 IVNIIKHPSYNPPKK----YFDIALMELDKDVFFSKYVQPACL-WPHFDLSSLGKKASAT 735
           I  +I HP Y+  +K      DIAL++ +KD+ F   V PACL + HF  S  G   +  
Sbjct: 236 INKVIIHPKYDIIEKDDWQINDIALLKTEKDIKFGDKVGPACLPFQHFLDSFAGSDVTVL 295

Query: 736 GWG 744
           GWG
Sbjct: 296 GWG 298


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 25.0 bits (52), Expect = 0.81
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -2

Query: 567 SVFRDYAIVYFLV*NIFVADLT--ILGIGSAMEVSFREKLVQ*AAVSI 430
           +V  D   +Y  V  IF+A +    LGIG  + VSF   L    A SI
Sbjct: 394 TVNMDGTALYEAVAAIFIAQMNGISLGIGEVITVSFTATLASIGAASI 441


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -2

Query: 360 APMCGNSPGNVLRPPIANDGWTLLC 286
           AP CG  P  +  P + +DG  L C
Sbjct: 367 APSCGGGPTILTTPGLDSDGIRLPC 391


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 84  SWGYVDNTKSNNQSATTE 137
           SW  +DNT +N+Q  +++
Sbjct: 361 SWSSLDNTNTNDQDYSSQ 378


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 370 PAYGTHVWKFAR 335
           PA+ THVWK  R
Sbjct: 420 PAWKTHVWKKGR 431


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 192 LVSQNWVLLDYKVCTLQVL 136
           ++  +WV LD  +CT  +L
Sbjct: 109 MLCDSWVSLDILLCTASIL 127


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,439
Number of Sequences: 438
Number of extensions: 5873
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)