Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0431.Seq
         (793 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g38430.1 68417.m05431 expressed protein contains Pfam profile...    31   0.66 
At4g20160.1 68417.m02949 expressed protein ; expression supporte...    31   0.88 
At5g05940.1 68418.m00657 expressed protein contains Pfam profile...    29   3.5  
At3g21330.1 68416.m02694 basic helix-loop-helix (bHLH) family pr...    29   4.7  
At5g52965.1 68418.m06573 hypothetical protein                          28   6.2  
At3g03790.2 68416.m00389 ankyrin repeat family protein / regulat...    28   6.2  
At3g03790.1 68416.m00388 ankyrin repeat family protein / regulat...    28   6.2  
At1g68020.2 68414.m07771 glycosyl transferase family 20 protein ...    28   6.2  
At1g68020.1 68414.m07770 glycosyl transferase family 20 protein ...    28   6.2  
At3g48675.1 68416.m05315 hypothetical protein                          28   8.2  

>At4g38430.1 68417.m05431 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 548

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 26/85 (30%), Positives = 34/85 (40%)
 Frame = +3

Query: 123 SATTEEPEVCKPYNPTVPNFEKPGRRISEVKCYEYLWNINFREEVIEDWTNALSCIIMSS 302
           S    E E+  PY  T+P   K G+       Y+YL    F  E +      L C+ +SS
Sbjct: 284 SGVLAEMEIPDPYLETLP---KSGKECLGEIIYQYLTANKFSPECL------LDCLDLSS 334

Query: 303 HHLLLGDATHYLANFHTWVP*AGRQ 377
            H  L  A    A  H W    GR+
Sbjct: 335 EHQTLEIANRIEAAVHVWRQKNGRR 359


>At4g20160.1 68417.m02949 expressed protein ; expression supported by
            MPSS
          Length = 1188

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +3

Query: 12   PENDALQGSSDNNSDGNKRPEEIWSWGYVDN--TKSNNQSATTEEPEVCKPYNPTVPNFE 185
            PE   L+  SD  S  + R   + SW + D    K N  + +   PE   P N +  + +
Sbjct: 1037 PEKTNLEAPSDVCSQSSARSSTMMSWNFRDQDIDKDNEPTTSLSLPEPLVPTNQSTQDMQ 1096

Query: 186  KPGRRISEVKCYEYLWNINFREEVIEDWTNALSCIIMSSH 305
                 IS++K  E +  +  + E++E      SCI M  H
Sbjct: 1097 ----TISDLK--EQMEQL--QREMLELRNTVKSCIDMQLH 1128


>At5g05940.1 68418.m00657 expressed protein contains Pfam profile
           PF03759: Domain of unknown function (DUF315)
          Length = 611

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = +3

Query: 123 SATTEEPEVCKPYNPTVPNFEKPGRRISEVKCYEYLWNINFREEVIEDWTNALSCIIMSS 302
           S    E +V K Y  T+P   K GR       Y Y+ +  F  E +      L C+ +SS
Sbjct: 296 SLALTEMDVPKSYLETLP---KNGRSCLGDVIYRYVTSDKFSAESL------LDCLDLSS 346

Query: 303 HHLLLGDATHYLANFHTW 356
            H+ L  A    A+ + W
Sbjct: 347 EHIALDIANRVEASIYVW 364


>At3g21330.1 68416.m02694 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 373

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 72  EEIWSWGYVDNTKSNNQSATTEEPEVCKP 158
           + +WS+G V + +S N+  TTE     KP
Sbjct: 117 QTLWSFGGVSSAESENREITTETTTTIKP 145


>At5g52965.1 68418.m06573 hypothetical protein
          Length = 120

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 165 PTVPNFEKPGRRISEVKCYEYLWNI 239
           PTVP    PG  I  VKC+  L+N+
Sbjct: 32  PTVPGLLLPGLPIDLVKCWSSLFNV 56


>At3g03790.2 68416.m00389 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1081

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 529 DKEVNDGIIPEDREIVNIIKHPSYNPPKKYFDIALMELDKDVFFSKYVQP 678
           ++E+++G + +D E VN+++   Y+ PK+    +L  L + V     V+P
Sbjct: 535 NEELDEGFMFDDVESVNVLQSVQYDNPKERIVPSLKSLCEKVAAECIVEP 584


>At3g03790.1 68416.m00388 ankyrin repeat family protein / regulator
           of chromosome condensation (RCC1) family protein similar
           to hect domain and RLD 2 GB:NP_004658 [Homo sapiens];
           contains Pfam PF00415: Regulator of chromosome
           condensation (RCC1); contains Pfam PF00023: Ankyrin
           repeat; similar to rjs (GI:3414809) [Mus musculus];
           similar to  HERC2 (GI:4079809) [Homo sapiens]
          Length = 1078

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = +1

Query: 529 DKEVNDGIIPEDREIVNIIKHPSYNPPKKYFDIALMELDKDVFFSKYVQP 678
           ++E+++G + +D E VN+++   Y+ PK+    +L  L + V     V+P
Sbjct: 532 NEELDEGFMFDDVESVNVLQSVQYDNPKERIVPSLKSLCEKVAAECIVEP 581


>At1g68020.2 68414.m07771 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 860

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 IPMEYKFQRRGDRRLDKCFKLHNN 295
           IP EY   R+G+ +LDK  KL  N
Sbjct: 456 IPYEYIVSRQGNEKLDKILKLEAN 479


>At1g68020.1 68414.m07770 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           SP|Q00764 Alpha,alpha-trehalose-phosphate synthase
           [UDP-forming] 56 kDa subunit (EC 2.4.1.15)
           (Trehalose-6-phosphate synthase) {Saccharomyces
           cerevisiae}; contains Pfam profile: PF02358
           trehalose-phosphatase
          Length = 700

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 224 IPMEYKFQRRGDRRLDKCFKLHNN 295
           IP EY   R+G+ +LDK  KL  N
Sbjct: 456 IPYEYIVSRQGNEKLDKILKLEAN 479


>At3g48675.1 68416.m05315 hypothetical protein
          Length = 119

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 165 PTVPNFEKPGRRISEVKCYEYLWNI 239
           PT+P    PG  I  +KC+  L+N+
Sbjct: 30  PTIPGLFPPGLPIDIIKCWSSLFNV 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,253,984
Number of Sequences: 28952
Number of extensions: 438898
Number of successful extensions: 1266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1785055200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)