Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0430.Seq
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar...    30   0.27 
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ...    28   1.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.6  
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe...    26   5.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.9  
SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr ...    26   5.9  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   5.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    25   7.8  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   7.8  

>SPBC23G7.08c |rga7||GTPase activating protein
           Rga7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +3

Query: 135 TLPRKYSTA*RTKRPHSDPPSLTASNRVSRTWTPASVS 248
           TLP   +T  +T R  + PPS   SNR +  + P SVS
Sbjct: 455 TLPPIQTTTIQTSREVAPPPSSINSNRAASPFRPTSVS 492


>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 179 SFGSTLLDCIQSGVENLDSGVGIYARTPSRTP 274
           +FG  +LD + +   +L++ VG+   TP RTP
Sbjct: 541 TFGLDILDILNASDADLNNYVGLKKMTPYRTP 572


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 165 RTKRPHSDPPSLTASNRVSRTWTPASVS 248
           R  RP  +PP L+ASN    T  P++ S
Sbjct: 391 RMVRPIGNPPDLSASNEAEATMPPSNGS 418


>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 298 IIEDYHNGFKKTDKHPPKNW 357
           I++  ++ FK + KH P+NW
Sbjct: 304 IVQHKNDIFKSSQKHQPRNW 323


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 21/91 (23%), Positives = 33/91 (36%)
 Frame = +2

Query: 14  SDGCSSARKAATMVDAATLEKLEAGFSKLQGSDSKSLLKKYLTKEVFDSLKNKKTSFGST 193
           S   SS+  ++ +  +++        S    S S S      T     S  +  +SF ST
Sbjct: 261 STASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSST 320

Query: 194 LLDCIQSGVENLDSGVGIYARTPSRTPCSPS 286
           L     S   +  S     + T S +  SPS
Sbjct: 321 LSSSSMSSSSSFSSSPTSSSSTISSSSSSPS 351


>SPBC23G7.13c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 664

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 20/51 (39%), Positives = 25/51 (49%)
 Frame = -2

Query: 180 EVFLFFRLSNTSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFLAL 28
           E + F RL  T    +F S + E      L  AS  S+VAA  I AAF+ L
Sbjct: 518 EKYDFNRLLAT-FAMHFSSEEDEIQQTKKLNRASVISKVAALIITAAFIIL 567


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +3

Query: 72  RNWRLVSASSRDPTLSRC*RSTLPRKYSTA*RTKRPHSDPPSL 200
           RN    + S  DP+L RC ++   RKYS    T + ++   SL
Sbjct: 250 RNEEFNALSDLDPSLRRCLQAKCNRKYSLLLDTLQQNAQDYSL 292


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 379 NLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMEDKV 501
           N+D A EF++ T      S++G   N C+ +  YK   DKV
Sbjct: 798 NMDFA-EFLIDTNA----SIKGSVVNTCVLDFLYKSFSDKV 833


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 150 TSLVRYFFSSDLESDPWSLLKPASNFSRVAASTIVAAFL 34
           +SLV++     ++     +LKP + F  V A   VA FL
Sbjct: 384 SSLVKWLTKRKIKMASEGILKPLNEFQAVVARDSVAKFL 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,357,503
Number of Sequences: 5004
Number of extensions: 47367
Number of successful extensions: 181
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)