Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0430.Seq
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0256 - 13564070-13564456,13564543-13565299,13565734-135665... 32 0.49
06_03_0793 + 24662506-24663512,24664470-24664787,24664996-246653... 30 2.0
03_05_0447 - 24421442-24422767 29 2.6
11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717 29 3.5
10_01_0333 + 3675806-3676001,3676783-3677783 29 3.5
12_01_0481 + 3788921-3789475 29 4.6
07_01_0893 + 7484598-7484744,7484837-7484902,7494387-7494530,749... 29 4.6
04_03_0999 - 21600231-21600788,21600896-21601056,21601149-216012... 28 6.1
02_05_0385 - 28506326-28506891,28506993-28507405,28507496-285077... 28 8.0
02_02_0704 + 13095449-13095584,13095671-13095990,13096102-130964... 28 8.0
>04_03_0256 -
13564070-13564456,13564543-13565299,13565734-13566535,
13566884-13566917
Length = 659
Score = 31.9 bits (69), Expect = 0.49
Identities = 18/70 (25%), Positives = 32/70 (45%)
Frame = -3
Query: 530 LALEAGQVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGSRLPSVSTSPQF 351
+ L+A P + +Y ++ G+ GY S PQ ++ R+P+ T F
Sbjct: 190 MILKANTSPTNWTESKIYITILQDGVYGYVESTPPQLYYNYVVSTNKSKRVPTTVT---F 246
Query: 350 LGGCLSVFLK 321
GC S+F++
Sbjct: 247 TNGCFSIFVQ 256
>06_03_0793 + 24662506-24663512,24664470-24664787,24664996-24665323,
24665465-24665887,24665960-24666252,24666332-24666605,
24666856-24667358,24667464-24667785,24667875-24668220,
24668339-24668997,24669524-24669625,24669656-24670052,
24670155-24670270,24670360-24670386
Length = 1704
Score = 29.9 bits (64), Expect = 2.0
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Frame = +2
Query: 77 LEAGFSKLQGSDSKSLLKKYLTKEVFDSLKNKKTSFGSTL-LDCIQSGVENLDSGVGIYA 253
L AG +KL SDS+S +K+ +FD LK+ F + + ++S + L S +
Sbjct: 1269 LLAGLAKLT-SDSRSTIKRSAVGVLFDILKDHGQLFSESFWTNILESVIYPLFSSERSSS 1327
Query: 254 RTPSRTPCSP 283
P+ TP P
Sbjct: 1328 NDPTSTPSIP 1337
>03_05_0447 - 24421442-24422767
Length = 441
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +2
Query: 17 DGCSSARKAATMVDAATLEKLEAGFSKLQG-SDSK 118
DGC S+ ++ AA L +LEAG K G SD++
Sbjct: 63 DGCGSSGAGDALLAAAALARLEAGLRKRTGDSDAR 97
>11_03_0183 - 11310671-11313625,11314243-11314287,11314550-11314717
Length = 1055
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = -2
Query: 189 DPNEVFLFFRLSNTSLVRYFFSSDLE-SDPWSLLKPASNFSRVAASTIVAAFLA 31
D +++ L + LV YF+ SD SLL SNF+R+A+ + ++ F++
Sbjct: 139 DASKLALKHTRAGAPLVAYFWDKTFAWSDASSLLPFCSNFTRLASQSTMSGFVS 192
>10_01_0333 + 3675806-3676001,3676783-3677783
Length = 398
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 217 CRELGLRRRYLRADAESYSVFAELFD 294
C + G+ +RY+ DAE SV E+ D
Sbjct: 66 CHKSGIEKRYIHLDAELISVHPEIID 91
>12_01_0481 + 3788921-3789475
Length = 184
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -3
Query: 518 AGQVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPA 390
AG+ T + I +YW V G PS Q R TTNS A
Sbjct: 31 AGETTATTTHIKVYWHDVVSG----PSPTAVQVARAATTNSSA 69
>07_01_0893 +
7484598-7484744,7484837-7484902,7494387-7494530,
7494860-7495235,7495904-7496017,7496282-7496454,
7496562-7496669,7497311-7497377,7497791-7497904,
7498121-7498257,7498727-7498813,7498962-7498986,
7499044-7499266,7499770-7499947,7500039-7500152,
7500249-7500380,7500488-7500588,7500720-7500933
Length = 839
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Frame = +2
Query: 2 LAVGSDGCSSARKAATMVDAATLEKLEAG-FSKLQGSDSKSLLKKYLTKEVFDSLKNKKT 178
+ +G S K + + + +++ + G F K D S + K+ T+E+ D+ K
Sbjct: 85 IPIGPPPRISVWKGGMIKEYSKMDECKTGDFGKRPLIDDISTVCKWFTRELSDTTYGKNA 144
Query: 179 SFGSTLLDCI 208
+ +LDC+
Sbjct: 145 QLAAKVLDCV 154
>04_03_0999 -
21600231-21600788,21600896-21601056,21601149-21601241,
21601379-21601531,21601917-21601992,21602078-21602197,
21602348-21602597,21602917-21603008,21603408-21603581
Length = 558
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -3
Query: 434 ERPQRTRVETTNSPAGSRLPSVSTSPQFLGGCLSVF 327
+RP+ +RV T +R+P + +++ G LS F
Sbjct: 36 KRPRSSRVAQTRPQPEARIPGTQSDSEYMSGQLSAF 71
>02_05_0385 -
28506326-28506891,28506993-28507405,28507496-28507743,
28507820-28508480,28508572-28509498,28509588-28509847,
28509943-28510143,28515547-28515633,28516200-28516375,
28516465-28516519,28516623-28516910
Length = 1293
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/71 (26%), Positives = 30/71 (42%)
Frame = -3
Query: 563 HAGEGVERALELALEAGQVPETLSSISLYWDSVRQGLKGYPSSERPQRTRVETTNSPAGS 384
+ GE L + + + + +IS + +R YP + +R V +S AG
Sbjct: 340 NGGESFTTMLNVVIAGLSLGQAAPNISTF---LRARTAAYPIFQMIERNTVNKASSKAGR 396
Query: 383 RLPSVSTSPQF 351
LPSV QF
Sbjct: 397 TLPSVDGHIQF 407
>02_02_0704 +
13095449-13095584,13095671-13095990,13096102-13096423,
13096556-13096632,13096744-13097127
Length = 412
Score = 27.9 bits (59), Expect = 8.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 243 PTPESKFSTPDWMQS 199
P PE+K TPDW+QS
Sbjct: 117 PPPEAKKVTPDWLQS 131
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,181,617
Number of Sequences: 37544
Number of extensions: 380952
Number of successful extensions: 1556
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -