Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0430.Seq
         (691 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30710.2 68417.m04353 expressed protein contains Pfam domain,...    31   0.54 
At4g30710.1 68417.m04352 expressed protein contains Pfam domain,...    31   0.54 
At1g21170.1 68414.m02647 expressed protein                             30   1.7  
At1g18420.1 68414.m02300 expressed protein contains Pfam profile...    30   1.7  
At5g65580.1 68418.m08251 expressed protein                             29   2.2  
At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein ...    29   3.8  
At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein ...    29   3.8  
At4g38890.1 68417.m05508 dihydrouridine synthase family protein ...    28   5.1  
At2g43945.1 68415.m05462 expressed protein                             27   8.9  

>At4g30710.2 68417.m04353 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +3

Query: 36  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPRKYSTA*RTKRPHSDPPSLTA 206
           E   ++ +P P++N R  S S   PT+S   +S   ++  +A R KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQSVAAKRAVSAER-KRP-STPPSPTS 85


>At4g30710.1 68417.m04352 expressed protein contains Pfam domain,
           PF04484: Family of unknown function (DUF566)
          Length = 644

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 21/57 (36%), Positives = 32/57 (56%)
 Frame = +3

Query: 36  EKPQQWSTPQPSRNWRLVSASSRDPTLSRC*RSTLPRKYSTA*RTKRPHSDPPSLTA 206
           E   ++ +P P++N R  S S   PT+S   +S   ++  +A R KRP S PPS T+
Sbjct: 31  EVSSRYRSPTPTKNGRCPSPSVTRPTVSSSSQSVAAKRAVSAER-KRP-STPPSPTS 85


>At1g21170.1 68414.m02647 expressed protein
          Length = 1090

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/51 (33%), Positives = 31/51 (60%)
 Frame = +2

Query: 116  KSLLKKYLTKEVFDSLKNKKTSFGSTLLDCIQSGVENLDSGVGIYARTPSR 268
            +++LK YLT +  +SLK+ +   G+ L   I+S  E +++  G + R P+R
Sbjct: 952  ETILKPYLTVDATESLKSLQ---GAVLEKAIESISETVENNPGGHQRKPTR 999


>At1g18420.1 68414.m02300 expressed protein contains Pfam profile
           PF01027: Uncharacterized protein family UPF0005
          Length = 581

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 313 HNGFKKTDKHPPKNWGDVDTLGNLDPA 393
           H    +    PPKNW DV T  NL  A
Sbjct: 470 HKSQSEATLRPPKNWDDVTTAANLSSA 496


>At5g65580.1 68418.m08251 expressed protein 
          Length = 102

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +3

Query: 480 QGDGGQGLRHLSSLEGELKGTFYPLTGM*KE 572
           Q DGG G R    L GE+KG  +PLT M +E
Sbjct: 68  QTDGGDGERE-RRLRGEVKGFSFPLTTMVEE 97


>At1g69420.2 68414.m07975 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 17  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 130
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At1g69420.1 68414.m07974 zinc finger (DHHC type) family protein
           contains Pfam profile: PF01529: DHHC zinc finger domain
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 17  DGCSSARKAATMVDAATLEKLEAGFS-KLQGSDSKSLLK 130
           DGC SA   A   D   +E  E G + KL+ S+  SLL+
Sbjct: 96  DGCGSATGGAKSHDGTCVEDTENGSNKKLESSERSSLLR 134


>At4g38890.1 68417.m05508 dihydrouridine synthase family protein
           contains Pfam domain, PF01207: Dihydrouridine synthase
           (Dus)
          Length = 700

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +1

Query: 343 PPKNWG--DVDTLGNLDPAGEFVVSTRVRCGRSLEGYPFNPCLTESQYKEMED 495
           PP  +G  D++TL   + AG++V  + +  G+  EG+ F P    + Y   E+
Sbjct: 647 PPSYFGRDDLETLMMSESAGDWVRISEMLLGKVPEGFTFAPKHKSNAYDRAEN 699


>At2g43945.1 68415.m05462 expressed protein
          Length = 289

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 670 PRPLGQKLQALAACRKRSPSLNRKWSSMSCC 578
           P P      A ++ R ++P+  R+ SS SCC
Sbjct: 21  PPPPPDSFHAPSSFRSKNPNFKRRLSSSSCC 51


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,935,438
Number of Sequences: 28952
Number of extensions: 269929
Number of successful extensions: 1041
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1041
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1467502800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)