Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0427.Seq
(725 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 132 6e-32
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 130 1e-31
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 112 4e-26
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 91 1e-19
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 82 7e-17
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 46 4e-06
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 42 9e-05
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 30 0.29
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 29 0.68
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 28 1.2
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 28 1.2
SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1 |S... 28 1.2
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 27 2.1
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 2.7
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 27 3.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 3.6
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 26 4.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 4.8
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 26 4.8
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 4.8
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.8
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 26 6.3
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 26 6.3
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 26 6.3
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 26 6.3
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 25 8.3
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 132 bits (318), Expect = 6e-32
Identities = 65/84 (77%), Positives = 67/84 (79%)
Frame = +3
Query: 255 IETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELT 434
IETAGGVMT LIKRN YSDNQPGVLIQVFEGERA TKD NLLGKFEL+
Sbjct: 401 IETAGGVMTPLIKRNTTIPTKKSEIFSTYSDNQPGVLIQVFEGERARTKDCNLLGKFELS 460
Query: 435 GIPPAPRGVPQIEVTXDIDANGIL 506
GIPPAPRGVPQIEVT D+DANGIL
Sbjct: 461 GIPPAPRGVPQIEVTFDVDANGIL 484
Score = 98.7 bits (235), Expect = 7e-22
Identities = 46/72 (63%), Positives = 58/72 (80%)
Frame = +2
Query: 509 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 688
VSA+EK T K KITITNDKGRLSKEEI+RMV EAEKY+ ED+ + IQAKN LESY +
Sbjct: 486 VSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYAY 545
Query: 689 SMKSTMEDEKLK 724
S++++++D LK
Sbjct: 546 SLRNSLDDPNLK 557
Score = 92.3 bits (219), Expect = 6e-20
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 1 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXX 180
E+ LRD+K+DKA +++IVLVGGSTRIP+VQKL+ DFFNGKE KSINPDE
Sbjct: 316 ERVLRDSKVDKASVNEIVLVGGSTRIPRVQKLVSDFFNGKEPCKSINPDEAVAYGAAVQA 375
Query: 181 XILHGDKSEEVQD 219
+L GD SE+ QD
Sbjct: 376 AVLTGDTSEKTQD 388
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 130 bits (315), Expect = 1e-31
Identities = 64/84 (76%), Positives = 67/84 (79%)
Frame = +3
Query: 255 IETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELT 434
IETAGGVMT LIKRN Y+DNQPGVLIQVFEGERA TKD NLLGKFEL+
Sbjct: 401 IETAGGVMTPLIKRNTTIPTKKSEVFSTYADNQPGVLIQVFEGERARTKDCNLLGKFELS 460
Query: 435 GIPPAPRGVPQIEVTXDIDANGIL 506
GIPPAPRGVPQIEVT D+DANGIL
Sbjct: 461 GIPPAPRGVPQIEVTFDVDANGIL 484
Score = 100 bits (239), Expect = 2e-22
Identities = 46/72 (63%), Positives = 59/72 (81%)
Frame = +2
Query: 509 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 688
VSA+EK T K KITITNDKGRLSKEEI+RMV+EAEKY+ ED+ + IQAKN LESY +
Sbjct: 486 VSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYAY 545
Query: 689 SMKSTMEDEKLK 724
S++++++D LK
Sbjct: 546 SLRNSLDDPNLK 557
Score = 91.9 bits (218), Expect = 8e-20
Identities = 44/73 (60%), Positives = 54/73 (73%)
Frame = +1
Query: 1 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXX 180
EK LRD+K+DK+ +++IVLVGGSTRIP++QKL+ DFFNGKE KSINPDE
Sbjct: 316 EKVLRDSKIDKSSVNEIVLVGGSTRIPRIQKLVSDFFNGKEPCKSINPDEAVAYGAAVQA 375
Query: 181 XILHGDKSEEVQD 219
IL GD SE+ QD
Sbjct: 376 AILVGDTSEKTQD 388
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 112 bits (270), Expect = 4e-26
Identities = 55/84 (65%), Positives = 61/84 (72%)
Frame = +3
Query: 255 IETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELT 434
IET GGVMT LI RN DNQ VLIQV+EGER +TKDNNLLGKF+L
Sbjct: 430 IETTGGVMTKLIGRNTPIPTRKSQIFSTAVDNQNTVLIQVYEGERTLTKDNNLLGKFDLR 489
Query: 435 GIPPAPRGVPQIEVTXDIDANGIL 506
GIPPAPRGVPQIEVT ++DANG+L
Sbjct: 490 GIPPAPRGVPQIEVTFEVDANGVL 513
Score = 78.6 bits (185), Expect = 8e-16
Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
Frame = +2
Query: 509 VSAIEKS-TNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 685
VSA++KS K K+ I NDKGRLS+E+IERMV EAE++ ED KE I+A+N LE+Y
Sbjct: 515 VSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENYA 574
Query: 686 FSMKSTMEDEK 718
+S+K +D++
Sbjct: 575 YSLKGQFDDDE 585
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/70 (48%), Positives = 48/70 (68%)
Frame = +1
Query: 1 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXX 180
E+ L+D+ + K++I DIVLVGGSTRIPKVQ+LL+ FF GK+ +K INPDE
Sbjct: 348 EQVLKDSNLKKSEIDDIVLVGGSTRIPKVQELLESFF-GKKASKGINPDEAVAYGAAVQA 406
Query: 181 XILHGDKSEE 210
+L G++ +
Sbjct: 407 GVLSGEEGSD 416
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 91.1 bits (216), Expect = 1e-19
Identities = 43/84 (51%), Positives = 55/84 (65%)
Frame = +3
Query: 255 IETAGGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELT 434
IET GGV T LI RN +D Q V I+VF+GER + +DN L+G F+LT
Sbjct: 444 IETLGGVFTRLINRNTTIPTRKSQVFSTAADGQTAVEIRVFQGERELVRDNKLIGNFQLT 503
Query: 435 GIPPAPRGVPQIEVTXDIDANGIL 506
GI PAP+G PQIEV+ D+DA+GI+
Sbjct: 504 GIAPAPKGQPQIEVSFDVDADGII 527
Score = 60.5 bits (140), Expect = 2e-10
Identities = 32/72 (44%), Positives = 45/72 (62%)
Frame = +2
Query: 509 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 688
VSA +K+TNK++ IT+ G L+ EIE MV +AEKYR D +KE I+ N ES C
Sbjct: 529 VSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVCT 587
Query: 689 SMKSTMEDEKLK 724
++S ++ K K
Sbjct: 588 DIESNLDIHKDK 599
Score = 50.0 bits (114), Expect = 3e-07
Identities = 22/65 (33%), Positives = 41/65 (63%)
Frame = +1
Query: 1 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDEXXXXXXXXXX 180
+++L+DA + ++I++++LVGG TR+P+V + ++ F +E KS+NPDE
Sbjct: 364 KRALKDANLQTSEINEVILVGGMTRMPRVVETVKSIFK-REPAKSVNPDEAVAIGAAIQG 422
Query: 181 XILHG 195
+L G
Sbjct: 423 GVLSG 427
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 82.2 bits (194), Expect = 7e-17
Identities = 36/49 (73%), Positives = 44/49 (89%)
Frame = +1
Query: 4 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 150
K L+D+K+ KA +HDIVLVGGSTRIPKVQ+L+ DFF+G+ LNKSINPDE
Sbjct: 321 KVLKDSKVPKADVHDIVLVGGSTRIPKVQRLVSDFFDGRALNKSINPDE 369
Score = 70.5 bits (165), Expect = 2e-13
Identities = 34/81 (41%), Positives = 45/81 (55%)
Frame = +3
Query: 267 GGVMTTLIKRNXXXXXXXXXXXXXYSDNQPGVLIQVFEGERAMTKDNNLLGKFELTGIPP 446
G V + RN +DNQ V V++GER +N LG+F+LTGIPP
Sbjct: 410 GNVFGVVCPRNTPIPTIKKRTFTTVADNQTTVTFPVYQGERVNCAENEPLGEFQLTGIPP 469
Query: 447 APRGVPQIEVTXDIDANGILK 509
PRG ++E T ++DANGILK
Sbjct: 470 MPRGQAELEATFELDANGILK 490
Score = 57.2 bits (132), Expect = 2e-09
Identities = 24/69 (34%), Positives = 46/69 (66%)
Frame = +2
Query: 506 QVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 685
+V+A+EK+T + I ITN G LS +I+ M+ A+K++ +D + ++AK+ LESY
Sbjct: 490 KVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESYI 549
Query: 686 FSMKSTMED 712
++++T+ +
Sbjct: 550 SNIETTISE 558
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 46.4 bits (105), Expect = 4e-06
Identities = 18/49 (36%), Positives = 35/49 (71%)
Frame = +1
Query: 4 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 150
K+L+ A + ++I+ I+L GG++RIP +Q L D+ + +++K++N DE
Sbjct: 353 KALKKANLTFSEINSIILFGGASRIPFIQSTLADYVSSDKISKNVNADE 401
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 41.9 bits (94), Expect = 9e-05
Identities = 20/50 (40%), Positives = 35/50 (70%)
Frame = +1
Query: 1 EKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSINPDE 150
EK+L A + K ++ I +VGG TR+P V++++ ++F GK L+ ++N DE
Sbjct: 324 EKALELAGIKKEDLYSIEMVGGCTRVPIVKEVIANYF-GKGLSFTLNQDE 372
Score = 32.7 bits (71), Expect = 0.055
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +2
Query: 524 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 700
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 701 TMED 712
++D
Sbjct: 593 KLDD 596
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 30.3 bits (65), Expect = 0.29
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +1
Query: 4 KSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 135
+++ A M+ I +++L GG++ PK+ L++ F + + +S
Sbjct: 343 EAVEKANMEPFDISEVILAGGASNTPKLTSLMESIFPEQTIIRS 386
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 29.1 bits (62), Expect = 0.68
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = +2
Query: 566 KGRLSKEEIERMVNEAEKYRNEDD 637
KG LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 28.3 bits (60), Expect = 1.2
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 533 NKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCF 688
NK+ K T D SKEE+E +V E E D +Q + K+ L++ F
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKF 576
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.3 bits (60), Expect = 1.2
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Frame = -3
Query: 231 KQQQILHLLR-LVTVQDSSLDSCTISYG-LVRVNRFV--ELLSIKEILQELLHLGDTSGA 64
K QQ+L LL LV D+ +DS + L ++ V S+ ELL LGD S
Sbjct: 932 KHQQLLDLLESLVGNNDNLIDSIKTPHTELQKITDHVLKGTTSLANHTNELLGLGDESLC 991
Query: 63 THQYNIVDLSLIHLGIT 13
+ I D SL+ L T
Sbjct: 992 NLETTIEDTSLVKLETT 1008
>SPBC28F2.10c |kap1||chromatin remodeling complex subunit Ngg1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 28.3 bits (60), Expect = 1.2
Identities = 20/71 (28%), Positives = 38/71 (53%)
Frame = +2
Query: 503 PQVSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESY 682
PQ S +EK +K+ K++ +++ +S E +E + NE + D+Q + KNA +
Sbjct: 121 PQESMLEK-VSKKPKVSEAHNE-EISPENVETIENELDLPVKGKDEQTTGLVYKNANDLL 178
Query: 683 CFSMKSTMEDE 715
S+ S + D+
Sbjct: 179 TGSLLSFIVDD 189
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2
Query: 509 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNED 634
VS ++S K + + K EE+E VNE E++R D
Sbjct: 259 VSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 2.7
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 599 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 703
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 509 VSAIEKSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 670
V A+ KS +++ ++ G + EEI ++++ E E+D++ E N+
Sbjct: 597 VPALFKSIDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNS 650
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 3.6
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = +2
Query: 539 ENKITITNDKGRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME 709
++++TIT++ S E++E++ N AEK + E + K + ++ LES S + +E
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLE 341
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/67 (23%), Positives = 26/67 (38%)
Frame = -1
Query: 443 WDPGQLEFTEQVVIFGHSTLTLKYLDEYSGLVIRVGGECLSLFSGDGSVTLDECGHDTSS 264
WD G+ ++ I GHS +L L+ +G V+ S+ H
Sbjct: 61 WDNGKFSLVDRFTIDGHSPTSLCVLE--NGSVLTANYNSASISRSKAKDEKPHVWHHEGK 118
Query: 263 SLNPRER 243
SL+P +
Sbjct: 119 SLHPERQ 125
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 26.2 bits (55), Expect = 4.8
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 298 TLPSPLNRLRHSPPTLITNPEYSSKYLR 381
T P RLRH+P I E KYLR
Sbjct: 43 TYGQPFKRLRHAPEKYIEFLELRLKYLR 70
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 4.8
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 10/76 (13%)
Frame = +2
Query: 473 GHXRHRCQRYPQVSAIEKSTNKENKIT----ITNDKGRLSKEEIER-----MVNEAE-KY 622
GH + P VS IEK+T + +T N G+L K EIE ++N+
Sbjct: 1206 GHLDLDTEASPVVSTIEKTTKGDVSVTEEQQSANIDGQLEKPEIEESKKPDVLNQVSLSI 1265
Query: 623 RNEDDKQKETIQAKNA 670
E K KE+ NA
Sbjct: 1266 EEEKPKNKESEVDNNA 1281
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = +2
Query: 578 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 700
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.8
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +2
Query: 578 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK 724
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLK
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLK 1653
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 6.3
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = -2
Query: 499 PLASMSXVTSI*GTPRGAGGIPVSSNLPSKLLSLVIARSPS 377
PLA MS TSI G G GG P + + + + +SPS
Sbjct: 81 PLADMSAGTSIMGNNFGFGGFPRMNRRQRRRMG-IFDQSPS 120
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 566 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 676
+G L E E NEA++ NE+ E +N E
Sbjct: 89 EGELKLENFENQENEADEAENEETSYSEQNHTENTEE 125
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 6.3
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +2
Query: 527 STNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCF 688
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLF 101
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.8 bits (54), Expect = 6.3
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +2
Query: 566 KGRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDE 715
+GR + + N+ E + DDKQ + KN+LE+ M+ + E
Sbjct: 1259 RGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETIDEKMEDASKIE 1308
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.4 bits (53), Expect = 8.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 524 KSTNKENKITITNDKGRLSKEEIERMVNEAEKYRNEDDKQKET 652
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,803,374
Number of Sequences: 5004
Number of extensions: 51310
Number of successful extensions: 250
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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