Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0425.Seq
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   7.6  
AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical ...    28   7.6  

>U39999-6|AAA81107.2|  198|Caenorhabditis elegans Hypothetical
           protein F41G3.10 protein.
          Length = 198

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 711 RRLCPQTCQYHRGCGAPTARRTNATTSFL 625
           R+ CP+TC Y  G G  T  RT+ T + L
Sbjct: 130 RQQCPRTCGYCSGSGVVTTTRTSTTCADL 158


>Z68318-5|CAA92694.1|  418|Caenorhabditis elegans Hypothetical
           protein T21B10.4 protein.
          Length = 418

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 380 GSIPEREPEKRLPHPR-KAAGAQITHSRHGR**RKI-TIRDSYEARNRNEYTLNI 538
           G  P+     +  HP+ + AG  +    +GR   KI TIR+   + N N +TLN+
Sbjct: 55  GHCPQFMVNPKTNHPKFRFAGVHLVRDPNGRFPPKIMTIREDDHSFNANIFTLNV 109


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 434 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 330
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>AF038611-7|AAB92040.1|  466|Caenorhabditis elegans Hypothetical
           protein E04A4.6 protein.
          Length = 466

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 70  DTANGSIYQFWFLRSYSVTWITVVILELIHAIRTL 174
           D+  G++   WF +++SV WI +V+   I   +T+
Sbjct: 224 DSLPGNVDNNWFEQTFSVYWIPLVVASEIETNQTV 258


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,082,697
Number of Sequences: 27780
Number of extensions: 326990
Number of successful extensions: 856
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)