Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0423X.Seq
(482 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr... 31 0.069
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 30 0.16
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 29 0.28
SPBC6B1.04 |mde4||monopolin-like complex subunit Mde4|Schizosacc... 29 0.37
SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyce... 27 2.0
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 2.0
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 26 3.4
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 26 3.4
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom... 25 4.5
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 4.5
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 4.5
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 6.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 25 6.0
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 25 6.0
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 25 6.0
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 7.9
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 25 7.9
SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomy... 25 7.9
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 7.9
>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 308
Score = 31.5 bits (68), Expect = 0.069
Identities = 14/61 (22%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Frame = +2
Query: 242 QEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLD-HLSNEKAAQEKIVKQL 418
++AQ ++ + QL ++N+ E+ER YF+++ ++ + HL+ + E +++++
Sbjct: 175 KQAQQQITSLETQLYEVNETMFGLERERDFYFNKLREIEILVQTHLTTSPMSMENMLERI 234
Query: 419 Q 421
Q
Sbjct: 235 Q 235
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 30.3 bits (65), Expect = 0.16
Identities = 18/73 (24%), Positives = 36/73 (49%)
Frame = +2
Query: 245 EAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQH 424
++ V + ++++QLN + K E ++A S+ L + + K+ Q+K +
Sbjct: 17 DSDEEVQRISDKVNQLNTSENKNEDQKATNLSD--RLGPKITENVDAKSEQDKATNTIAE 74
Query: 425 QLNEVQSKADEAN 463
N QS+ DE+N
Sbjct: 75 DANTKQSENDESN 87
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.5 bits (63), Expect = 0.28
Identities = 16/75 (21%), Positives = 37/75 (49%)
Frame = +2
Query: 242 QEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQ 421
+EA+ +++ +L ++N + K+ + DLRA L+ SNE + ++ +
Sbjct: 430 EEARSSLAHATGKLAEINSERDFQNKKIKDFEKIEQDLRACLNSSSNELKEKSALIDKKD 489
Query: 422 HQLNEVQSKADEANR 466
+LN ++ + E +
Sbjct: 490 QELNNLREQIKEQKK 504
Score = 28.3 bits (60), Expect = 0.64
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Frame = +2
Query: 284 DQLNKLKAKAEKER---AQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQHQLNE---VQS 445
D+L L+ K++K+ A + ++ + L+ L+NEK E IV Q N V+
Sbjct: 1116 DELLALRKKSKKQHDLCANFVDDLKEKSDALEQLTNEK--NELIVSLEQSNSNNEALVEE 1173
Query: 446 KADEANRTLNDL 481
++D ANR L+D+
Sbjct: 1174 RSDLANR-LSDM 1184
>SPBC6B1.04 |mde4||monopolin-like complex subunit
Mde4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 29.1 bits (62), Expect = 0.37
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 284 DQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKADEAN 463
D L K A K+ A ++ + L NEK EK+++Q Q++ N+ + K +
Sbjct: 43 DSLQKSFLDALKQSATDSELLHKNLDEIKFLQNEKLNNEKLLEQEQNEANDYRLKVERLE 102
Query: 464 RTLND 478
++D
Sbjct: 103 HKISD 107
>SPAC5H10.03 |||phosphoglycerate mutase family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 219
Score = 26.6 bits (56), Expect = 2.0
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Frame = +2
Query: 242 QEAQHAVSEMGEQLDQLNKLKAKAEKERAQ--YFSEVNDLRAGLDHLS--NEKAAQEKIV 409
QE H ++G +LD+LNKL K + Q + E D+ A +S K A E +
Sbjct: 96 QEVGHLPCDIGLELDKLNKLYPKYNFQSCQDGIYPEKRDIYASDVTISAIRSKEALEYLA 155
Query: 410 KQLQHQLNEVQSKA 451
Q Q+ + A
Sbjct: 156 ALPQQQIAVITHSA 169
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 2.0
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 132 TSAQIELNKKREAELSKLRRDLEEANIQHEATLANLRKKHNM 257
+ + ELNKK EAEL ++++ E Q N K HN+
Sbjct: 1056 SETESELNKK-EAELVIFQKEITEYRDQLHKAFQNPEKTHNI 1096
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 260 VSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQL 418
VSE G+ D K+ E+ +S+ N++ D LSN + + V L
Sbjct: 1026 VSERGDYDDNAKKVDEVISIEKVDGYSKENNVPLSEDDLSNSSESSNESVYSL 1078
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 25.8 bits (54), Expect = 3.4
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = +2
Query: 275 EQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNE 385
E+ +QL K K EKE + S+ DL+ GL L++E
Sbjct: 109 EKQEQLQK--EKYEKENPKVSSQFADLKRGLSTLTDE 143
>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 554
Score = 25.4 bits (53), Expect = 4.5
Identities = 12/39 (30%), Positives = 16/39 (41%)
Frame = -3
Query: 207 WPPRGHGXXXXXXXXXXXXXXSEQRWRHRLPRAFRRALQ 91
WPP H W+++L RA RRAL+
Sbjct: 261 WPPNQHIKFAHDDKNVVSTDFIHPDWQYKLERARRRALR 299
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 4.5
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Frame = +2
Query: 245 EAQHAVSEMGEQLDQLNKLKAKA---EKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQ 415
E S++ L + N+LK K EK+ E+ LR + +EKA + K
Sbjct: 923 ELLEKTSKVETLLSEQNELKEKLSLEEKDLLDTKGELESLRENNATVLSEKAEFNEQCKS 982
Query: 416 LQHQLNEVQSKADEANRTLND 478
LQ + ++ D+ + ++D
Sbjct: 983 LQETIVTKDAELDKLTKYISD 1003
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.4 bits (53), Expect = 4.5
Identities = 14/65 (21%), Positives = 27/65 (41%)
Frame = +2
Query: 236 PPQEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQ 415
PP E +S +L + A+ ++ DLR D + +E A Q+++ ++
Sbjct: 64 PPDETTATLSATNRRLSTSQQSLARLSRKSNNSAGFGRDLRYAFDRVFDETATQQQVYER 123
Query: 416 LQHQL 430
L
Sbjct: 124 TARPL 128
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +2
Query: 368 DHLSNEKAAQEKIVKQLQHQ--LNEVQSKADEANRTLND 478
D EK + +++K +H+ LNE +K EAN N+
Sbjct: 232 DLKKREKDLENRLLKVEEHEKSLNERATKLSEANENFNN 270
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 25.0 bits (52), Expect = 6.0
Identities = 17/72 (23%), Positives = 30/72 (41%)
Frame = +2
Query: 242 QEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQ 421
++ Q+ + E+ E+LD L + E E A ++ + NE + LQ
Sbjct: 288 RQLQNRLDELSEELDVAQDLLTEKEDEIATLKRQIEEKENSSSAFENE---ENSSYVHLQ 344
Query: 422 HQLNEVQSKADE 457
+Q+K DE
Sbjct: 345 EDYAILQAKCDE 356
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.0 bits (52), Expect = 6.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +3
Query: 135 SAQIELNKKREAELSKLRRDLEEANIQHEATLANLRKKHN 254
S QIE +KK E+ + +LE + E L+ + K+N
Sbjct: 313 SRQIEFSKKDESSKLNILSELESKISEKENELSEILPKYN 352
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 242 QEAQHAVSEMGEQLDQLNKLKAK 310
Q+ Q+ E+G+ L QLN LK K
Sbjct: 556 QQIQYLDEELGKTLKQLNDLKEK 578
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 24.6 bits (51), Expect = 7.9
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Frame = +2
Query: 227 PRQ--PPQEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQE 400
PRQ PP+ A + S + + K + V L A LD++SNEKA +E
Sbjct: 1274 PRQAEPPKRALRSNSGKAASNKRTTRNSMKTHSAM-DTLTAVAALDAELDNMSNEKAKEE 1332
Query: 401 --KIVKQLQHQLNEVQ----SKADEANRTLNDL 481
+ + +NE S E N T++D+
Sbjct: 1333 VDHVKSENGESVNEPNTEDLSLETEENTTVSDI 1365
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 344 VNDLRAGLDHLSNEKAAQEKIVKQLQHQLNEVQSKADEANRTLNDL 481
V LR +D S E++ ++ ++ N+VQ+ +DE N+ N +
Sbjct: 1469 VTYLRRIIDLASAEESVEQALITVGNVADNDVQNSSDEENQVPNGI 1514
>SPBC3B9.19 |mge1||GrpE domain chaperone protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 223
Score = 24.6 bits (51), Expect = 7.9
Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 7/40 (17%)
Frame = +2
Query: 383 EKAAQEKI-------VKQLQHQLNEVQSKADEANRTLNDL 481
EK A+EK+ VK+LQ +L+E++SK + ++ + +L
Sbjct: 38 EKPAEEKVAETENVDVKELQSKLSELKSKYEAKDKEVAEL 77
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 153 NKKREAELSKLRRDLEEANIQHE 221
N K + +LSKL D+ +N HE
Sbjct: 53 NNKNKEDLSKLYSDVTTSNTSHE 75
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,001,351
Number of Sequences: 5004
Number of extensions: 11823
Number of successful extensions: 84
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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