Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0423X.Seq
         (482 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.0  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   3.1  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   5.5  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    22   9.6  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 15/70 (21%), Positives = 35/70 (50%)
 Frame = +2

Query: 239 PQEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQL 418
           PQ+     ++M  +   LN   +    E  Q+F E+ + R+  +  +N+ A     V++L
Sbjct: 138 PQDRVQDFTKMNPRELLLNTQSSVCTPEVQQWFEELKEKRSLQEKSTNQGAEGTARVREL 197

Query: 419 QHQLNEVQSK 448
           + +L  ++++
Sbjct: 198 EARLEALEAQ 207


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 290 LNKLKAKAEKERAQYFSEVNDLRAGLDHLS 379
           L K+K  + +E A+  +E N L  GL+ L+
Sbjct: 216 LEKMKTDSTEELARIVNEANRLVRGLERLN 245


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 14/77 (18%), Positives = 29/77 (37%)
 Frame = +2

Query: 227 PRQPPQEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKI 406
           PRQ  Q+ Q    + GE+       + + +++  Q   +    R         +  Q + 
Sbjct: 279 PRQQQQQQQQQQQQQGERYVPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQQRQQQQRQQ 338

Query: 407 VKQLQHQLNEVQSKADE 457
            +Q Q Q  + Q +  +
Sbjct: 339 QQQQQQQQRQQQQRQQQ 355


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 242 QEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDL 355
           QE   +  ++  Q+D+ NK   + +K++  Y S  ND+
Sbjct: 435 QEHTESFEQLRVQIDEHNKNFYELKKKKDHYQSLRNDI 472


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 265,818
Number of Sequences: 2352
Number of extensions: 3424
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 42285900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)