Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0423X.Seq
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.18 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   0.98 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   0.98 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   0.98 
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    24   0.98 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   4.0  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   4.0  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 0.18
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 251 QHAV--SEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEKIVKQLQH 424
           QH++   +  +Q  Q +  +  + +ER  YFS + D +     L  +K   E+ ++QLQ 
Sbjct: 94  QHSLYLQQQQQQHHQDSSSEHASNQERFGYFSSLKDHQHQFAELGRKKL--EQAIQQLQE 151

Query: 425 QL 430
           QL
Sbjct: 152 QL 153


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 405 IFSWAAFSLDKWSRPARRSL 346
           I SW +F LD+ + PAR SL
Sbjct: 257 IVSWVSFWLDQSAVPARVSL 276


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -3

Query: 405 IFSWAAFSLDKWSRPARRSL 346
           I SW +F LD+ + PAR SL
Sbjct: 257 IVSWVSFWLDQSAVPARVSL 276


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 138 QRWRHRLPRAFRRALQVHERGQRV 67
           +RWR R+  A      ++ RG+R+
Sbjct: 311 ERWRDRIYEAIHTGSVINTRGERI 334


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 23.8 bits (49), Expect = 0.98
 Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
 Frame = +2

Query: 224 HPRQPPQEAQHAVSEMGEQLDQLNKLKAKAEKERAQYFSEVNDLRAGLDHLSNEKAAQEK 403
           HP   PQ+ QH      + L    +     +++++Q  S+ +  + G+     ++A Q +
Sbjct: 176 HPHMQPQQGQHQSQAQQQHLQAHEQHMMYQQQQQSQAASQQS--QPGMHPRQQQQAQQHQ 233

Query: 404 --IVKQLQHQLNEVQSKADEAN 463
             +   L  Q       A  AN
Sbjct: 234 GVVTSPLSQQQQAAPQGAASAN 255


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 405 IFSWAAFSLDKWSRPARRSL 346
           I SW +F L++ + PAR +L
Sbjct: 236 IISWVSFWLNRNATPARVAL 255


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 405 IFSWAAFSLDKWSRPARRSL 346
           I SW +F L++ + PAR +L
Sbjct: 236 IISWVSFWLNRNATPARVAL 255


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -3

Query: 405 IFSWAAFSLDKWSRPARRSL 346
           I SW +F L++ + PAR +L
Sbjct: 175 IISWVSFWLNRNATPARVAL 194


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,838
Number of Sequences: 438
Number of extensions: 895
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)