Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0421.Seq
         (674 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar...    30   0.27 
SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.9  
SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|c...    27   2.5  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.7  
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc...    26   5.7  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.6  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   10.0 

>SPAC26A3.09c |rga2||GTPase activating protein
           Rga2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1275

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = -3

Query: 606 DDSGIKVLPDRQLGALVEREQGV----ESDLERVYRDSN*RRMLSTNLSSTDLCPRELPR 439
           D+SGI V  + +L  LV +++ +      DLE+V +D+   RM  +   STD  P   P 
Sbjct: 73  DNSGI-VSQNERLMKLVNKQREIIYELHKDLEKVKKDNTSLRMRLSKYESTDSFPSSQPS 131

Query: 438 EMRDQRSPS 412
                +S S
Sbjct: 132 RANSPQSDS 140


>SPCC338.02 |mug112||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 125

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = +3

Query: 36  CTCSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAV 209
           CTC   R    S       L  +T   IS+CDL DD+ S   +  +   C   E   +
Sbjct: 26  CTCFPKRKKEASERSCFPFLDTET---ISSCDLSDDVLSPKLFAKNSYRCSLKETKCI 80


>SPAC1F12.08 |||cytidylyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 86  DAHVDALMIWS*SRTGANARRTERVLR 6
           DA +D+L++   ++TGA A + ERV R
Sbjct: 257 DAEIDSLIVSEETKTGATAVQEERVKR 283


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +1

Query: 181 GAVRESVTPCSATSKCG-GSMTSISSHCGAAHGPSLRPR*GRGARTLGHPAASSDASTSH 357
           G    S  P +A +  G G+  S +++ G   G   RP+  R  R +G+P   S ++ + 
Sbjct: 353 GGSSNSAGPIAAATAAGVGADASDAANTG---GSFTRPQGARMVRPIGNPPDLSASNEAE 409

Query: 358 NTCWTKRGLRFQNG 399
            T     G  F  G
Sbjct: 410 ATMPPSNGSNFSEG 423


>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = +1

Query: 442 RQLSRTQIRGTQVRGQHAPSVRVSV-DSFQIALDSLLAFHECAQLPIGENFYPTVVGESV 618
           R+++     G ++  ++  S    V D   +  DS +   +CA L +G+N    +  +  
Sbjct: 661 RKVTTAAAEGFKLDVEYLESFAAQVPDQSIVNADSFIELRQCANLLLGDNMEEYLDTDKF 720

Query: 619 YGDFN 633
             DFN
Sbjct: 721 MRDFN 725


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 499  SVRVSVDSFQIALDSLLAFHECAQL 573
            SV +S + FQ+ +DS+ + H C+ L
Sbjct: 4425 SVDISNNFFQLGMDSIRSIHLCSYL 4449


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 51  SRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEG--CGAGER 200
           S+P  K   + +  ++  + S++S  + ++     + YTS E G  C  G+R
Sbjct: 291 SKPSKKGSKLKISNITLRSGSVVSLYNRINSQTVRTKYTSIEAGQFCLRGDR 342


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,124
Number of Sequences: 5004
Number of extensions: 47063
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)