Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0421.Seq
(674 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1038 - 23449764-23450204 32 0.48
10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622 31 0.64
10_02_0112 + 5385660-5385821,5386337-5386876 31 1.1
02_05_0190 - 26592452-26592693,26592911-26593004,26593425-265936... 30 1.9
12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934 29 2.6
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 29 3.4
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 29 3.4
04_04_0295 - 24212526-24212684,24213066-24213218,24213497-242136... 29 3.4
05_03_0650 - 16582296-16583042 29 4.5
03_05_0358 - 23438416-23439282,23440116-23440163,23440343-234403... 29 4.5
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 28 5.9
04_04_0069 + 22506885-22508354 28 5.9
08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337 28 7.8
05_01_0595 + 5344721-5345249,5349183-5349264,5349813-5350507,535... 28 7.8
>07_03_1038 - 23449764-23450204
Length = 146
Score = 31.9 bits (69), Expect = 0.48
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -1
Query: 398 PFWKRKPLLVQHVLCDVEASLEAAGWPSVRAPRP*RGRSDGPWAA 264
P W PLL +LC +EA + G +R PR S PWAA
Sbjct: 39 PVWGTPPLLCGELLCRLEAVVSLQG--KLRLPRQCCSLSGLPWAA 81
>10_06_0119 - 10956190-10956754,10956984-10957139,10958402-10958622
Length = 313
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 404 RGPFWKRKPLLVQHVLCDVEASLEAAGWPS 315
RG +W+R+P + +L DV S GWP+
Sbjct: 258 RGRWWRRRPRCEEELLVDVTRSSVHEGWPA 287
>10_02_0112 + 5385660-5385821,5386337-5386876
Length = 233
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/33 (42%), Positives = 23/33 (69%)
Frame = +3
Query: 81 GVIKLSPDTASLISACDLLDDMKSESSYTSSEE 179
G K+SPD +L+S+ ++DDM ESSY + ++
Sbjct: 144 GEEKMSPDDVALLSS--MVDDMNMESSYENDDD 174
>02_05_0190 -
26592452-26592693,26592911-26593004,26593425-26593656,
26594660-26595066
Length = 324
Score = 29.9 bits (64), Expect = 1.9
Identities = 16/53 (30%), Positives = 24/53 (45%)
Frame = +1
Query: 229 GGSMTSISSHCGAAHGPSLRPR*GRGARTLGHPAASSDASTSHNTCWTKRGLR 387
GG+ TS +S A+ RPR G R L + ++ + CW R +R
Sbjct: 30 GGASTSATSPVAASSSSGGRPRTRSGGRLLRATSPPPPSAIAAAACWESRTMR 82
>12_01_0147 + 1138382-1138532,1138660-1138967,1139233-1139934
Length = 386
Score = 29.5 bits (63), Expect = 2.6
Identities = 25/73 (34%), Positives = 31/73 (42%)
Frame = +1
Query: 181 GAVRESVTPCSATSKCGGSMTSISSHCGAAHGPSLRPR*GRGARTLGHPAASSDASTSHN 360
G R+ + CSATS GS +S S A P L P RG+ G + S
Sbjct: 299 GLRRKRMMACSATSFDDGSSSSSSDFLHVAKKPLLLPSDSRGS---GFGGGYCNQQLSE- 354
Query: 361 TCWTKRGLRFQNG 399
T G +FQNG
Sbjct: 355 ---TATGFQFQNG 364
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 154 NRAIHRQKKGAVRESVTPCSATS-KCGGSMTSISSHCGAAHGPSLRPR*GRGA 309
++ + QKK ++ ES+T C + +CG + S+ C S R G G+
Sbjct: 456 SKKLKEQKKESIAESLTNCQRLAVECGAAEDSVEYFCATQLFASKHNRDGEGS 508
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 154 NRAIHRQKKGAVRESVTPCSATS-KCGGSMTSISSHCGAAHGPSLRPR*GRGA 309
++ + QKK ++ ES+T C + +CG + S+ C S R G G+
Sbjct: 456 SKKLKEQKKESIAESLTNCQRLAVECGAAEDSVEYFCATQLFASKHNRDGEGS 508
>04_04_0295 -
24212526-24212684,24213066-24213218,24213497-24213601,
24213694-24213913,24214033-24214199,24214323-24214497,
24214627-24214799,24214914-24214983,24215401-24215900
Length = 573
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/34 (47%), Positives = 19/34 (55%)
Frame = +3
Query: 210 LSYEQVRRLNDIDLISLRSCPRPVTATALRPRCS 311
LSYE ++ I L+ LR C R VT L RCS
Sbjct: 463 LSYEDTQQDILIGLLRLRKCGRNVTCPELVGRCS 496
>05_03_0650 - 16582296-16583042
Length = 248
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +1
Query: 163 IHRQKKGAVRESVTPCSATSKCGGSMTSISSHCGAAH 273
+HR GA R + TPC++ CGG+ C +H
Sbjct: 184 LHRVVAGAARAAATPCAS---CGGTRFVPCGTCDGSH 217
>03_05_0358 -
23438416-23439282,23440116-23440163,23440343-23440382,
23440459-23440610
Length = 368
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -1
Query: 428 TSGHRPS---SRGPFWKRKPLLVQHVLCDVEASLEAAGWPS 315
T G RP+ RG W+R+P + L V S GWP+
Sbjct: 251 TDGGRPAWRERRGRRWRRRPRCEEEQLVGVARSSAHEGWPA 291
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 54 RPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSS 173
RPD V + ++ P + + LLDD+K+ SS SS
Sbjct: 507 RPDRDDVELAILDDDPYRYGINNEDMLLDDLKANSSLVSS 546
>04_04_0069 + 22506885-22508354
Length = 489
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -1
Query: 404 RGPFWKRKPLLVQHVLCDVEASLEAAGWPS 315
R P W+R+P + +L V S GWP+
Sbjct: 383 RRPAWRRRPRCEEELLVGVARSSAHKGWPA 412
>08_02_0384 + 16552194-16552621,16552909-16553173,16553239-16553337
Length = 263
Score = 27.9 bits (59), Expect = 7.8
Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 2/75 (2%)
Frame = +1
Query: 100 RTPRPSYLPATCSMT*RANRAIHRQKKGAVRESVTPCSATSKCGGSMTSISSHCGAAHGP 279
R+P PSY A+ R R G +R ++ CGG AA
Sbjct: 26 RSPAPSYAGASPGYRLRRRRRRRGGVDGRLRRFLSRRVGVGGCGGGGGGGGKEAAAAREQ 85
Query: 280 S--LRPR*GRGARTL 318
+P GRG RTL
Sbjct: 86 EEYRKPLVGRGGRTL 100
>05_01_0595 +
5344721-5345249,5349183-5349264,5349813-5350507,
5350583-5350839,5350934-5351615,5351689-5351892,
5351981-5352715,5352799-5353181
Length = 1188
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 260 AELPTARHCDRVKAAVLGHLATLLPPATPRRR 355
A P RH RV+ +LG + PP PRRR
Sbjct: 71 AGAPPCRHPHRVRCVILGDIHA--PPRHPRRR 100
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,453,405
Number of Sequences: 37544
Number of extensions: 387468
Number of successful extensions: 1375
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1374
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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