Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0421.Seq
         (674 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)               88   5e-18
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)                30   1.5  
SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_14600| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)          28   7.9  
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  28   7.9  

>SB_8977| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 88.2 bits (209), Expect = 5e-18
 Identities = 42/82 (51%), Positives = 56/82 (68%)
 Frame = +2

Query: 263 ELPTARHCDRVKAAVLGHLATLLPPATPRRRTTHAGLKEAYVSKMVRVNSDGDRWSLISL 442
           E+ +  H  ++K+ VL  L   LP    + + +   LKEAYV KMV+V++D DRWSLISL
Sbjct: 91  EIKSHTHLQQIKSVVLSSLLNFLPNGVSKEKMSSCTLKEAYVQKMVKVSNDNDRWSLISL 150

Query: 443 GNSRGHKSVELKFVDNMRRQFE 508
            N+ G K++ELKFVD MRRQFE
Sbjct: 151 SNNDG-KNIELKFVDTMRRQFE 171



 Score = 70.9 bits (166), Expect = 9e-13
 Identities = 33/54 (61%), Positives = 41/54 (75%)
 Frame = +1

Query: 511 SVDSFQIALDSLLAFHECAQLPIGENFYPTVVGESVYGDFNEALHHLSEKLIAT 672
           SVDSFQ+ LDSLL F++ + +P+  NF+PTVV ESVYGD   AL HL  +LIAT
Sbjct: 173 SVDSFQVNLDSLLGFYKLSCVPMKPNFFPTVVAESVYGDIKVALFHLDNQLIAT 226


>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
          Length = 1064

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 73  STWASSN*VRTPRPSYLPATCSMT*RANRAI----HRQKKG--AVRESVTPCSATSKCG 231
           ++W +S   RT RPS    + +   R  RA+      QKK   AVRE+ T CS  +K G
Sbjct: 818 ASWRNSEEARTDRPSQQLRSLNGEWRLMRALLGDTSEQKKARAAVRETSTKCSVINKVG 876


>SB_44750| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2190

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/58 (27%), Positives = 23/58 (39%)
 Frame = +3

Query: 42  CSASRPDHKSVNMGVIKLSPDTASLISACDLLDDMKSESSYTSSEEGCGAGERHAVLS 215
           C++  P H  +N      S  T   +  C +  +    S YT   + CG G RH   S
Sbjct: 223 CTSPPPQHGGLNC-TGAFSETTPCNLRPCPINGNYTQWSEYTPCSKTCGGGTRHRTRS 279


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 55   DQIIRASTWASSN*VRTPRPSYLPATCSMT 144
            D+  RA T A+S+   TPRP+Y P T   T
Sbjct: 4646 DESERADTGAASSPSTTPRPTYSPTTHKTT 4675


>SB_14600| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +3

Query: 15  PLGPPRVCTCSASRPDHKSVNMGVIKLSPD 104
           P+G  R  TC  S+    S N GV K+ PD
Sbjct: 224 PVGARRNLTCHNSKQAASSGNQGVAKIGPD 253


>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
          Length = 472

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +2

Query: 347 RRRTTHAGLKEAYVSKMVRVNSDG--DRWSLISLGNSRGHKSVELKFVD 487
           RR TTH    +  + K++  N      +WS  SLG +RG  SV L   D
Sbjct: 239 RRNTTHKAKNQLPIPKIIFFNQWPFFSKWSNESLGIARGRCSVGLILQD 287


>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/15 (73%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
 Frame = +3

Query: 297 RP-RCSDTWPPCCLQ 338
           RP RCS  W PCCLQ
Sbjct: 355 RPLRCSSCWFPCCLQ 369


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,461,083
Number of Sequences: 59808
Number of extensions: 417388
Number of successful extensions: 1299
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1297
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)