Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0421.Seq
         (674 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.66 
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    23   3.5  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   6.1  
AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.          21   8.1  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.66
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +2

Query: 299 AAVLGHLATLLPPATPRRRTTHAGLKEAYVSKMVRVNSDGDRWSLISLGNSRGH-KSVEL 475
           A VL   ATL   A P+R +  A       S+ + VN DG+  +     N   H +S + 
Sbjct: 4   AVVLCTTATL---AAPQRPSGGADKDAVITSQQLEVNFDGNYINNFETSNGISHQESGQP 60

Query: 476 KFVDN 490
           K VDN
Sbjct: 61  KQVDN 65


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
 Frame = +3

Query: 204 AVLSYEQVRRLNDIDLISLRSC-PRPVTATALRPRCS 311
           A++  ++ +    I  +    C P+P+ + A R RCS
Sbjct: 22  AIIGVDECQATPVIHFLQYPGCVPKPIPSYACRGRCS 58


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 264 SCPRPVTATALRPRCSDTWPPCCLQRRLD 350
           SC + +  +A +  CS T  PC   R  D
Sbjct: 86  SCNKCIGCSAEKFECSKTSNPCLPHRNSD 114


>AY656663-1|AAT68000.1|  148|Apis mellifera pteropsin protein.
          Length = 148

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 305 VLGHLATLLPPATPRRRTTHAGLKEAYVSKMV 400
           V  + A +L     R+R   +G +EA ++KMV
Sbjct: 82  VSSYAAIVLTLKKVRKRAGASGRREAKITKMV 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,196
Number of Sequences: 438
Number of extensions: 3315
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20464920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)