Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0421.Seq
         (674 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    32   0.30 
At3g54680.1 68416.m06050 proteophosphoglycan-related contains si...    30   1.2  
At1g23270.1 68414.m02911 hypothetical protein                          29   2.8  
At5g50320.1 68418.m06232 radical SAM domain-containing protein /...    29   3.8  
At3g63070.1 68416.m07084 PWWP domain-containing protein putative...    28   6.6  
At5g58630.1 68418.m07347 expressed protein                             27   8.7  

>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +2

Query: 371 LKEAYVSKMVRVNSDGDRWSLISLGNSRGHKSVELKFVDNMRRQFE 508
           LKE+ V K  R+    +RW+L+S+G S   KS   KF++ + ++ E
Sbjct: 563 LKESKVFKGTRI----ERWALMSIGGSSDQKSTIPKFINELTQKCE 604


>At3g54680.1 68416.m06050 proteophosphoglycan-related contains
           similarity to proteophosphoglycan [Leishmania major]
           gi|5420389|emb|CAB46680
          Length = 211

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 213 SYEQVRRLNDIDLISLRSCPRPVTATALRPRCSDTWPPCCLQRRLDVAQHMLD 371
           SY  V R N   L+  +S P+P+ + +  P  + T PP     R+   Q + D
Sbjct: 33  SYSSVARSNGRMLVLTKSSPKPLRSPSAAPTTTTTAPPISTAPRIPSNQAISD 85


>At1g23270.1 68414.m02911 hypothetical protein
          Length = 180

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
 Frame = -3

Query: 648 VMQGLVKVAVNGFTDDSGIKVLPDRQLGAL----VEREQGVESDLERVYRDSN 502
           V++ + K+  +GFTDD+ +   P+ +L  L    V R   V S  +++   SN
Sbjct: 25  VLEQVAKINCSGFTDDTALPTNPETRLRRLKSLPVSRTDSVSSSPKKLLSHSN 77


>At5g50320.1 68418.m06232 radical SAM domain-containing protein /
           GCN5-related N-acetyltransferase (GNAT) family protein
           contains Pfam profiles PF00583: acetyltransferase, GNAT
           family, PF04055: Radical SAM superfamily
          Length = 565

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +3

Query: 210 LSYEQVRRLNDIDLISLRSCPRPVTATALRPRCS 311
           LSYE  R+   + L+ LR C + VT   L  +CS
Sbjct: 455 LSYEDTRQDILVGLLRLRKCGKNVTCPELMGKCS 488


>At3g63070.1 68416.m07084 PWWP domain-containing protein putative
           transcription factor HUA2, Arabidopsis thaliana,
           EMBL:AF116556
          Length = 1347

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +1

Query: 442 RQLSRTQIRGTQVRGQHAPSVRVSVDSFQIALDSLLAFHE 561
           ++ S+ +   TQV+   +  V+ +V+SF+ ALDSL+   E
Sbjct: 826 KEESKVETGTTQVKKVVSSDVQCTVESFETALDSLVRTKE 865


>At5g58630.1 68418.m07347 expressed protein 
          Length = 372

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
 Frame = -1

Query: 305 PRP*RGRSDGPWAAPQ---*DEIDVIEPPHLLVAEHGV 201
           P P RGR DGP A  +    D I VI+    L   H V
Sbjct: 58  PEPLRGRGDGPGAVARLMGLDSIPVIDKTRFLSRSHSV 95


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,859,754
Number of Sequences: 28952
Number of extensions: 270589
Number of successful extensions: 832
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)