Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0419.Seq
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.6  
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   4.5  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    26   6.0  

>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 42  YSGCVCTF*CLGFMIFIIHTRENPSLGISMRNI 140
           Y   +C    L F  F I + E+P+L +SMRN+
Sbjct: 121 YITSLCLSAILKFFSFRIISEESPNLALSMRNL 153


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/37 (43%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = -3

Query: 382 SQWKIYSD*KKHVKITLRKRDEERKKHALEL-KHSEA 275
           +Q + + + KKH K  LRK ++E KKHA E  K++E+
Sbjct: 283 NQLENHENSKKHKK-NLRKMNQEIKKHAKEAQKNAES 318


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 200 QSEHLFTTVVICLLNKKKTCARMRL 274
           Q +H  T ++IC  N  K CAR+ L
Sbjct: 354 QDDHGDTALLICARNGAKKCARLLL 378


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,756,602
Number of Sequences: 5004
Number of extensions: 54466
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)