Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0418.Seq
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.75 
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    29   0.99 
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   7.0  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   7.0  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    26   7.0  
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|...    26   7.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 179 YFVGFQN-SEVMINRDNWGHSYCDVRVKFLD 268
           Y VG+ N + ++++   WGHS+ +V  + LD
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLD 172


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 609 SVGGGAWPFLVGGAICLVNSGNERDSSLLNRRRYLGVRGLVSRNSLTT 752
           ++  G    L  G + ++N G E D  L N  RYL V  L   N++TT
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNVT-LTHDNNITT 90


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 588 LSILPVSGPGEISRVGSN*AAGSTPGG 508
           +SIL V+GP +  R+G +   G T  G
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWG 240


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 657  DKSLHQLRTAMHHHPPNQERAVNLSILPV 571
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 556  DFPCWVKLSRRLHSWWALPSIPLSFSFATILP 461
            DFP  +  +R L   W++P  P   +F +I+P
Sbjct: 1018 DFPVLIVWARNLSMHWSIP-FPTHHNFFSIIP 1048


>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 623 TTTHRIKKELLICQSFRCPGLVRFPVLGQIKP 528
           T   R+ K  +     RCP ++R+P L  IKP
Sbjct: 375 TAPSRLSKGFITEGGIRCPAIIRYPPL--IKP 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,297,340
Number of Sequences: 5004
Number of extensions: 70234
Number of successful extensions: 185
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)