Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0418.Seq
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0598 - 4443474-4443917                                           28   7.3  
07_01_0130 - 963856-965454                                             28   7.3  

>07_01_0598 - 4443474-4443917
          Length = 147

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 523 LHSWW-ALPSIPLSFSFATILPPESKIFGFPEAARRAIV 410
           + SW  A+P+ P     AT LPP     G P+AAR A+V
Sbjct: 24  MESWMVAVPAAP-----ATPLPPHEPSTGAPDAARAAVV 57


>07_01_0130 - 963856-965454
          Length = 532

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -2

Query: 645 HQLRTAMHHHPPNQERAVNLSILPVSGPGEISR 547
           H +   +   PPN     NL +LP+ GP ++ +
Sbjct: 195 HIINFLLRPEPPNTLSVDNLGVLPIIGPAKVGK 227


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,042,474
Number of Sequences: 37544
Number of extensions: 531252
Number of successful extensions: 1317
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1317
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)