Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0418.Seq
         (784 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)               50   2e-06
SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)               43   3e-04
SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   6e-04
SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)               40   0.003
SB_25094| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=2)             30   1.8  
SB_49830| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.8  
SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)                   28   9.8  

>SB_57691| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           K FAK VFINQERKLE RRR DT LVLT+N
Sbjct: 14  KAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_17617| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           K FAK VFINQERKLE RRR DT LVLT+N
Sbjct: 14  KAFAKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 261 SWIVARRTSAKAFCQRCFHQSRTKV 335
           SWI  RRT+AKAF +  F     K+
Sbjct: 4   SWIYERRTTAKAFAKNVFINQERKL 28


>SB_6465| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           K FAK VFINQERKLE RRR DT LVLT+N
Sbjct: 14  KAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_2383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           K FAK VFINQERKLE RRR DT LVLT+N
Sbjct: 14  KAFAKNVFINQERKLEDRRRSDTVLVLTIN 43


>SB_58054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           K FAK VFINQERKLE RRR DT LVLT+N
Sbjct: 33  KAFAKNVFINQERKLEDRRRSDTVLVLTIN 62


>SB_27342| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 48

 Score = 50.0 bits (114), Expect = 2e-06
 Identities = 24/30 (80%), Positives = 25/30 (83%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           K FAK VFINQERKLE RRR DT LVLT+N
Sbjct: 16  KAFAKNVFINQERKLEDRRRSDTVLVLTIN 45


>SB_33624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 22/27 (81%), Positives = 23/27 (85%)
 Frame = +1

Query: 301 AKGVFINQERKLEVRRRLDTALVLTVN 381
           AK VFINQERKLE RRR DT LVLT+N
Sbjct: 17  AKNVFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +2

Query: 254 VKFLDRRKTNISESILPKVF 313
           VKFLD RKTN  ESI   VF
Sbjct: 2   VKFLDLRKTNYCESIAKNVF 21


>SB_6881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = +1

Query: 310 VFINQERKLEVRRRLDTALVLTVN 381
           VFINQERKLE RRR DT LVLT+N
Sbjct: 20  VFINQERKLEDRRRSDTVLVLTIN 43



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/20 (70%), Positives = 14/20 (70%)
 Frame = +2

Query: 254 VKFLDRRKTNISESILPKVF 313
           VKFLD RKTN  ESI   VF
Sbjct: 2   VKFLDLRKTNYCESICQDVF 21


>SB_26327| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 23/42 (54%), Positives = 27/42 (64%)
 Frame = +1

Query: 256 EILGSSQDEHQRKHFAKGVFINQERKLEVRRRLDTALVLTVN 381
           EILG  +  +      +  FINQERKLE RRR DT LVLT+N
Sbjct: 3   EILGFRKTNYCES-ICQECFINQERKLEDRRRSDTVLVLTIN 43


>SB_1546| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +1

Query: 313 FINQERKLEVRRRLDTALVLTVN 381
           FINQERKLE RRR DT LVLT+N
Sbjct: 21  FINQERKLEDRRRSDTVLVLTIN 43



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 254 VKFLDRRKTNISESILPKVF 313
           VKFLD RKTN  ESI  + F
Sbjct: 2   VKFLDLRKTNYCESICQECF 21


>SB_13730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 41.1 bits (92), Expect = 0.001
 Identities = 19/23 (82%), Positives = 20/23 (86%)
 Frame = +1

Query: 313 FINQERKLEVRRRLDTALVLTVN 381
           FINQERKLE RRR DT LVLT+N
Sbjct: 21  FINQERKLEDRRRSDTVLVLTIN 43



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = +2

Query: 254 VKFLDRRKTNISESILPKVF 313
           VKFLD RKTN  ESI  + F
Sbjct: 2   VKFLDLRKTNYCESICQECF 21


>SB_1204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 99

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/23 (82%), Positives = 19/23 (82%)
 Frame = +1

Query: 292 KHFAKGVFINQERKLEVRRRLDT 360
           K FAK VFINQERKLE RRR DT
Sbjct: 6   KAFAKNVFINQERKLEDRRRSDT 28


>SB_25094| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=2)
          Length = 133

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 267 IVARRTSAKAFCQRCFHQSRTKVRGSKAI 353
           IV R+ + KA C RCF  SR   R S A+
Sbjct: 71  IVKRKVTRKATCARCFAGSRLPGRSSNAV 99


>SB_49830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 132

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +3

Query: 267 IVARRTSAKAFCQRCFHQSRTKVRGSKAI 353
           IV R+ + KA C RCF  SR   R S A+
Sbjct: 70  IVKRKVTRKATCARCFAGSRLPGRSSDAV 98


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -3

Query: 476 CNHTPPGVQNLWFPGSCPPSHCSNVGGSLDD 384
           C+   PG  +   PGSC P +C N+ GSL D
Sbjct: 854 CDRCMPG--SYGGPGSCKPCNC-NMAGSLSD 881


>SB_19517| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1696

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 443 WFPGSCPPSHCSNVGGSLDDIFTVRTRAVS 354
           W+PG CPP  C+    +L +  TV +  +S
Sbjct: 80  WYPGYCPPHKCAG-RNTLQECCTVYSPEIS 108


>SB_15898| Best HMM Match : Fork_head (HMM E-Value=0)
          Length = 460

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -3

Query: 467 TPPGV-QNLWFPGSCPPSHCSNVGG 396
           +P GV +N W PGS   S+C++ GG
Sbjct: 174 SPYGVDENSWSPGSSQSSNCTSPGG 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,417,979
Number of Sequences: 59808
Number of extensions: 553861
Number of successful extensions: 1610
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1610
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)