Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0417.Seq
(775 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1085 - 23851852-23853165 146 2e-35
03_05_0830 + 28034179-28035492 146 2e-35
01_07_0127 + 41234826-41236136 143 2e-34
02_05_0629 + 30475493-30475674,30477091-30477125,30477566-304777... 31 1.0
01_01_0453 - 3361460-3361549,3361660-3361846,3362038-3362139,336... 30 1.8
10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907 28 7.2
12_02_0966 - 24906361-24906958,24907084-24907250,24907403-249076... 28 9.5
01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,747... 28 9.5
>07_03_1085 - 23851852-23853165
Length = 437
Score = 146 bits (353), Expect = 2e-35
Identities = 69/84 (82%), Positives = 72/84 (85%)
Frame = +3
Query: 510 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
IKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTIVTE+GKEKKV IDFEPFKPIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN 120
Query: 690 TSLYLCDNKFHTEALTALLADDNK 761
SLYLCDNKFHTEAL LL D+K
Sbjct: 121 VSLYLCDNKFHTEALNELLESDDK 144
Score = 100 bits (239), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Frame = +1
Query: 331 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 507
MS+ DRN+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQI+RV+KML DE+GTAS
Sbjct: 1 MSDSHETDRNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQIARVAKMLGDEYGTASN 60
Query: 508 ISSHV 522
I S V
Sbjct: 61 IKSRV 65
>03_05_0830 + 28034179-28035492
Length = 437
Score = 146 bits (353), Expect = 2e-35
Identities = 69/84 (82%), Positives = 72/84 (85%)
Frame = +3
Query: 510 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
IKSRVNR SVL AITS Q RLKLY KVPPNGLV+Y GTIVTE+GKEKKV IDFEPFKPIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPIN 120
Query: 690 TSLYLCDNKFHTEALTALLADDNK 761
SLYLCDNKFHTEAL LL D+K
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDK 144
Score = 99.5 bits (237), Expect = 3e-21
Identities = 47/65 (72%), Positives = 56/65 (86%), Gaps = 1/65 (1%)
Frame = +1
Query: 331 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 507
MS+ D+N+EIWKIKKLIK+LE ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTAS
Sbjct: 1 MSDGQETDKNIEIWKIKKLIKALESARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 508 ISSHV 522
I S V
Sbjct: 61 IKSRV 65
>01_07_0127 + 41234826-41236136
Length = 436
Score = 143 bits (346), Expect = 2e-34
Identities = 66/84 (78%), Positives = 72/84 (85%)
Frame = +3
Query: 510 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
IKSRVNR SVL AITS Q RLKLY +VPPNGLV+Y GTIVT+EGKEKKV +DFEPF+PIN
Sbjct: 61 IKSRVNRQSVLAAITSAQQRLKLYNRVPPNGLVLYTGTIVTDEGKEKKVTVDFEPFRPIN 120
Query: 690 TSLYLCDNKFHTEALTALLADDNK 761
SLYLCDNKFHTEAL LL D+K
Sbjct: 121 ASLYLCDNKFHTEALNELLESDDK 144
Score = 96.7 bits (230), Expect = 2e-20
Identities = 44/65 (67%), Positives = 55/65 (84%), Gaps = 1/65 (1%)
Frame = +1
Query: 331 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 507
M++ D+N+EIWK+KKLIK L+ ARGNGTSMISLI+PP+DQ+SRV+KML DE+GTAS
Sbjct: 1 MADSHETDKNIEIWKVKKLIKGLDAARGNGTSMISLIMPPRDQVSRVTKMLGDEYGTASN 60
Query: 508 ISSHV 522
I S V
Sbjct: 61 IKSRV 65
>02_05_0629 +
30475493-30475674,30477091-30477125,30477566-30477724,
30478558-30478568,30479669-30479730,30480166-30480265,
30480495-30480770
Length = 274
Score = 31.1 bits (67), Expect = 1.0
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = +3
Query: 561 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
Q +L+LY KV L+ C ++T K+ K +DF F+P+N
Sbjct: 203 QQKLELYNKVRCKILLETCDYMLTHYPKQLKEQLDFS-FRPVN 244
>01_01_0453 -
3361460-3361549,3361660-3361846,3362038-3362139,
3362239-3362306,3362976-3363175,3363253-3363595,
3363837-3363893,3364011-3364727,3364805-3365007,
3365171-3365297
Length = 697
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = +1
Query: 280 YTNIVFVVN*LNKKRNKMSEESSADRNVEIWKIKKLIKSLE 402
Y + ++N L+KK +M E+ D + EI +KKL+K +E
Sbjct: 347 YAELYQIINDLSKKTEEM-EKMKVDSDQEILLLKKLVKVME 386
>10_01_0353 + 3882691-3882937,3883216-3883320,3883780-3883907
Length = 159
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 352 DRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 489
+R++E+W+I K ++ A+ TS ISL+ +++RVS D
Sbjct: 93 ERDLEVWRISKEVQVNMEAQTKSTSRISLL----GEVNRVSTRTVD 134
>12_02_0966 -
24906361-24906958,24907084-24907250,24907403-24907650,
24907824-24908001,24908196-24908372,24908459-24908563,
24908633-24908770,24909757-24910836
Length = 896
Score = 27.9 bits (59), Expect = 9.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 256 CKDIILVIYTNIVFVVN*LNKKRNKMSEESSADR 357
C+D+ L+I +NI + L + R + EE+ ADR
Sbjct: 515 CEDLRLIIQSNIYNYLGILLEGRERFEEEAIADR 548
>01_01_0953 - 7472173-7472178,7472216-7472311,7472370-7472462,
7472855-7473019,7473689-7474821,7474902-7475426,
7477077-7477249,7478737-7478831,7478893-7481688
Length = 1693
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/42 (33%), Positives = 26/42 (61%)
Frame = +1
Query: 364 EIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLAD 489
E+ +++KL+ S+E+ GNG M++ +D +S V+ L D
Sbjct: 1125 EVKELEKLVDSIEVDIGNGGKMMA---SDEDPVSEVNSKLRD 1163
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,905,327
Number of Sequences: 37544
Number of extensions: 392019
Number of successful extensions: 949
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -