Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0416.Seq
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...   140   2e-34
SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr 1|...    28   1.7  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    27   2.3  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    27   3.0  
SPCC1795.07 |||mitochondrial ribosomal protein subunit S37 |Schi...    27   3.9  
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb...    26   6.9  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   9.1  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score =  140 bits (340), Expect = 2e-34
 Identities = 65/88 (73%), Positives = 71/88 (80%)
 Frame = +3

Query: 510 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
           IKSRVNRLSVL AITS + RLKLY KVP NGLVIYCG ++ E  K +K+NIDFEPFKPIN
Sbjct: 59  IKSRVNRLSVLSAITSTRERLKLYNKVPDNGLVIYCGEVIMEGNKTRKLNIDFEPFKPIN 118

Query: 690 TSLYLCDNKFHTEALTALLADDNKLGFI 773
           TS YLCDNKFHTEAL  LL  D + GFI
Sbjct: 119 TSQYLCDNKFHTEALAELLESDQRFGFI 146



 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
 Frame = +1

Query: 331 MSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS- 507
           MSE  +A++ +EIWKI++L+K L    GNGTSMI+LIIPP +QISR S MLA+E+GTAS 
Sbjct: 1   MSE--TAEKAIEIWKIRRLVKQLINCHGNGTSMITLIIPPGEQISRYSNMLAEEYGTASN 58

Query: 508 ISSHV 522
           I S V
Sbjct: 59  IKSRV 63


>SPAC977.17 |||MIP water channel|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +3

Query: 144 DRSREVSRPSGSN*IRAV*NWNSGSLSIVFVYLKFWCVQRHYF 272
           D S++++ P   N I A  + +SGS     +YL +WC  RH+F
Sbjct: 271 DSSQDITMPP--NEIIAEESLDSGS-DTETLYLNYWCKIRHFF 310


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 603 LVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
           L ++    VT+EGKEK + I  E F+ I+
Sbjct: 619 LSLWTACCVTDEGKEKNIKIAVEIFREIS 647


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 310 LNKKRNKMSEE--SSADRNVEIWKIKKLIKSLEMARGNGTS 426
           LN+  N +S    SSAD  +E W   K I S + +R   TS
Sbjct: 10  LNRLNNGLSSNNGSSADEGLEHWNPLKKIHSADSSRRRSTS 50


>SPCC1795.07 |||mitochondrial ribosomal protein subunit S37
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 151

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +2

Query: 440 SFHLRIKSREYQRCWLMNLVQLLYQVTCESSLSAWRN 550
           SFH  ++ RE     L  L QLL  +T E  L   RN
Sbjct: 38  SFHNTLRVRELTNVQLTTLSQLLSGMTIEGDLRRQRN 74


>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 440

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/25 (44%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 330 FVSLFI*LINHKHYIC-INN*NNVF 259
           F + F+ L +HK+YIC + N NN++
Sbjct: 197 FSTKFVALSSHKNYICGLTNDNNLY 221


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +3

Query: 561 QHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPINTS 695
           Q  + L   +   G+ +   T+V   G     NID+  ++P N S
Sbjct: 120 QDLIDLADALHDRGMYLMVDTVVNHMGSSDPRNIDYGIYRPFNQS 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,747
Number of Sequences: 5004
Number of extensions: 66345
Number of successful extensions: 191
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)