Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0416.Seq
         (774 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)              173   2e-43
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)          31   1.4  
SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.2  
SB_925| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.62)            29   4.2  
SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)           29   5.5  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   29   5.5  
SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)                28   9.6  

>SB_3577| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1164

 Score =  173 bits (420), Expect = 2e-43
 Identities = 80/88 (90%), Positives = 84/88 (95%)
 Frame = +3

Query: 510  IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
            IKSRVNRLSVL AITSVQ RLKLY+KVPPNGLV+YCGTIVT++GKEKKVNIDFEPFKPIN
Sbjct: 839  IKSRVNRLSVLSAITSVQQRLKLYSKVPPNGLVVYCGTIVTDDGKEKKVNIDFEPFKPIN 898

Query: 690  TSLYLCDNKFHTEALTALLADDNKLGFI 773
            TSLYLCDNKFHTEAL ALLADDNK GFI
Sbjct: 899  TSLYLCDNKFHTEALNALLADDNKFGFI 926



 Score =  106 bits (254), Expect = 2e-23
 Identities = 54/60 (90%), Positives = 56/60 (93%), Gaps = 1/60 (1%)
 Frame = +1

Query: 346 SADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-ISSHV 522
           +ADRNVEIWKIKKLIKSLE ARGNGTSMISLIIPPKDQISRV+KMLADEFGTAS I S V
Sbjct: 784 AADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRV 843


>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
          Length = 609

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 710 VAEIKRCVDRLERLKINVHFLLFTFF 633
           V E+KR  DR+  +KINV F++ T F
Sbjct: 120 VLEVKRISDRICAIKINVGFIILTIF 145


>SB_46444| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 725

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/40 (40%), Positives = 25/40 (62%)
 Frame = +1

Query: 337 EESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKD 456
           +ES+AD   E W+I+KL+K L+   GN T+ I  +   +D
Sbjct: 150 QESNADLPSEYWQIQKLVKYLK--GGNQTATIIALCAMRD 187


>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 949

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 710 VAEIKRCVDRLERLKINVHFLLFTFF 633
           V E+KR  DR+  +KINV F + T F
Sbjct: 120 VLEVKRISDRICAIKINVGFTILTIF 145


>SB_925| Best HMM Match : Rick_17kDa_Anti (HMM E-Value=0.62)
          Length = 180

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = -3

Query: 646 SLPSSVTIVPQYITRPFGGTLVYSLSRCCTEVIAPST 536
           +LP ++ +V   I +P  G+L   +S C TE+I P++
Sbjct: 144 TLPLTLPLVLCAIAKPSHGSLRSLISNCSTEIITPNS 180


>SB_17219| Best HMM Match : Put_Phosphatase (HMM E-Value=5.7)
          Length = 500

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/27 (48%), Positives = 21/27 (77%)
 Frame = +1

Query: 310 LNKKRNKMSEESSADRNVEIWKIKKLI 390
           L +K++ MSE S+ DR+VE W++K +I
Sbjct: 107 LKRKKDVMSE-SAIDRSVEEWELKNVI 132


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 710 VAEIKRCVDRLERLKINVHFLLFTFF 633
           V E+KR  DR+  +KINV F + T F
Sbjct: 120 VLEVKRISDRICAMKINVGFTILTTF 145


>SB_10537| Best HMM Match : CTP_transf_2 (HMM E-Value=0)
          Length = 816

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 94  KKKSPSNRRRKCKLESVIGVARCLVRPVQTRLGQFE 201
           KKK+   R+  C    ++ +  C  RP+ +R+ ++E
Sbjct: 720 KKKTNVERKNICVNHDIVYIVICSGRPIDSRINKYE 755


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,809,588
Number of Sequences: 59808
Number of extensions: 474232
Number of successful extensions: 1212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1209
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2107953584
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)