Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0416.Seq
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical...   169   3e-42
J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein ( C.ele...    31   0.69 
AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kina...    31   0.69 
AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical ...    29   3.7  
AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical pr...    28   6.4  
AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical...    28   6.4  
AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical...    28   6.4  
AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical ...    28   6.4  

>AF016452-11|AAB66012.1|  443|Caenorhabditis elegans Hypothetical
           protein T05H4.6 protein.
          Length = 443

 Score =  169 bits (410), Expect = 3e-42
 Identities = 79/88 (89%), Positives = 82/88 (93%)
 Frame = +3

Query: 510 IKSRVNRLSVLGAITSVQHRLKLYTKVPPNGLVIYCGTIVTEEGKEKKVNIDFEPFKPIN 689
           IKSRVNRLSVLGAITSVQ RLKLY KVPPNGLV+YCGTI+T+EGKEKKVNIDFEPFK IN
Sbjct: 70  IKSRVNRLSVLGAITSVQGRLKLYNKVPPNGLVVYCGTIMTDEGKEKKVNIDFEPFKAIN 129

Query: 690 TSLYLCDNKFHTEALTALLADDNKLGFI 773
           TSLYLCDNKFHTEAL  LLADDNK GFI
Sbjct: 130 TSLYLCDNKFHTEALQGLLADDNKFGFI 157



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 46/62 (74%), Positives = 57/62 (91%), Gaps = 1/62 (1%)
 Frame = +1

Query: 340 ESSADRNVEIWKIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKMLADEFGTAS-ISS 516
           + +ADRNVE+WKIK+LIKSLE+ARGNGTSMISLIIPPKDQ++R+ +MLA+E+GTAS I S
Sbjct: 13  DDAADRNVEMWKIKRLIKSLELARGNGTSMISLIIPPKDQVARIQRMLAEEYGTASNIKS 72

Query: 517 HV 522
            V
Sbjct: 73  RV 74


>J05274-1|AAA27984.1|  360|Caenorhabditis elegans protein (
           C.elegans casein kinaseII-alpha gene, complete cds. ).
          Length = 360

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 373 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 483
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AF067211-13|AAC16993.1|  360|Caenorhabditis elegans Protein kinase
           protein 3 protein.
          Length = 360

 Score = 31.5 bits (68), Expect = 0.69
 Identities = 18/37 (48%), Positives = 25/37 (67%)
 Frame = +1

Query: 373 KIKKLIKSLEMARGNGTSMISLIIPPKDQISRVSKML 483
           KIK+ IK LE  RG GT++I+L+   KD ISR   ++
Sbjct: 76  KIKREIKILENLRG-GTNIITLLDVVKDPISRTPALI 111


>AC024799-9|AAK72312.1|  293|Caenorhabditis elegans Hypothetical
           protein Y49C4A.1 protein.
          Length = 293

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -3

Query: 142 HFLVYIYVCGCSDFSSCAGILGFFLI 65
           HFL+      CS+ ++C  I+ FF++
Sbjct: 79  HFLIVYLALPCSNIAACRSIIAFFIV 104


>AC006607-6|AAF60370.2|  496|Caenorhabditis elegans Hypothetical
           protein C09E7.5 protein.
          Length = 496

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/43 (34%), Positives = 26/43 (60%)
 Frame = +1

Query: 313 NKKRNKMSEESSADRNVEIWKIKKLIKSLEMARGNGTSMISLI 441
           NKKR++ S+++   +N EI  +KK + SL  ++    +M S I
Sbjct: 124 NKKRDEASKKTLNSKNEEIEHLKKRVISLSNSQSENETMKSKI 166


>Z71186-4|CAA94916.1|  867|Caenorhabditis elegans Hypothetical
           protein F23D12.5 protein.
          Length = 867

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 369 MEDKETYKEFGNGQRKWNIDDIPDHST*GSNLESIKDVG 485
           M DK T +  GN    ++ + +        N ES+KD+G
Sbjct: 476 MNDKNTVQRLGNAWAVFDFEGVTQLRDFAKNYESLKDIG 514


>AL132949-35|CAI70419.1|  466|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27b protein.
          Length = 466

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 44  HMLRGNRNKKKSKNPRTRRKVRAT 115
           H ++GN  KK++K+ +TR+K R++
Sbjct: 84  HEVQGNVTKKRTKHSKTRQKARSS 107


>AL132949-34|CAB61101.3|  574|Caenorhabditis elegans Hypothetical
           protein Y53F4B.27a protein.
          Length = 574

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/24 (41%), Positives = 19/24 (79%)
 Frame = +2

Query: 44  HMLRGNRNKKKSKNPRTRRKVRAT 115
           H ++GN  KK++K+ +TR+K R++
Sbjct: 192 HEVQGNVTKKRTKHSKTRQKARSS 215


>AC006749-1|AAV28322.1| 1372|Caenorhabditis elegans Hypothetical
           protein Y39D8B.1 protein.
          Length = 1372

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -1

Query: 294 HYICINN*NNVFAHTKTLNKRILWKGSPNSSFKL 193
           HYICIN   NV AH K +   +  +   N   K+
Sbjct: 184 HYICINESKNVTAHAKCVVVVLDQRNKRNEKLKM 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,914,814
Number of Sequences: 27780
Number of extensions: 373286
Number of successful extensions: 1002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)