Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0409.Seq
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   2.8  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.8  
SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces...    26   4.8  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    26   4.8  
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom...    26   6.4  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    26   6.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   8.5  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    25   8.5  
SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr...    25   8.5  

>SPBP35G2.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 249

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 450 LSEGVYFALCRPRSAHAMALVEVISNTYNKIHYQTNLEIKTIDDDLSF 307
           L+E  ++   R  S H  A+++ I   + K H   N+E+  I  DLSF
Sbjct: 124 LTEKGFYVTTRSIS-HFRAILDSIRYPFGKDHASKNMELLPITYDLSF 170


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/46 (28%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -3

Query: 417  PRSAHAM-ALVEVISNTYNKIHYQTNLEIKTIDDDLSFGISLTASW 283
            P   HA+ A +E +SN   K++ +    ++  DD +SF ++L  ++
Sbjct: 1089 PSLFHAIQATLEKVSNVNGKLNSENVAALRYADDTMSFLVTLQTTY 1134


>SPCC970.11c |wtf9||wtf element, Wtf2, pseudo|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 333

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 509 NSHQQNHTKATSQNSFPV 456
           N+H++NH+  T+ NS P+
Sbjct: 56  NTHRENHSSGTTDNSSPL 73


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +1

Query: 277 GRPRCRQRYSKR*IIIDGLY 336
           G+PR  + YSK  ++I+GLY
Sbjct: 318 GQPRTHRPYSKILVVIEGLY 337


>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1185

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 519 DIIKFTPTKSHQGDLSKLISRRGLS 445
           DIIK TPT    GDL++ + +  LS
Sbjct: 907 DIIKVTPTSKVVGDLAQFMVQNKLS 931


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 270 DLWTATMPSTIFQKIDHHRWSLFLNL 347
           DLW  T+ +    +ID+++W LF  L
Sbjct: 336 DLWKWTIENPFGFQIDNYKWKLFNTL 361


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 285 TMPSTIFQKIDHHRWSLFLNLFDNVSYCKYC*LP 386
           T PST F + D +     +N+ D++SY  Y  LP
Sbjct: 145 TSPSTFFIRYDDNITVAGINVQDSLSYSHYQALP 178


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 248 LVNVCCPWASFPAD 207
           +++  CPWA FP D
Sbjct: 393 ILDTTCPWAGFPVD 406


>SPCC794.02 |wtf5||wtf element Wtf5|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -1

Query: 509 NSHQQNHTKATSQNSFPV 456
           N+H++NH+  T+ NS P+
Sbjct: 56  NTHRENHSYGTTDNSSPL 73


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,846,045
Number of Sequences: 5004
Number of extensions: 57283
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)