Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0409.Seq
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0974 + 29831274-29833184                                         29   3.8  
12_01_0073 + 613316-613447,613611-613802,614067-614232,614460-61...    29   5.1  
11_01_0072 + 570345-570476,570640-570831,571095-571260,571487-57...    29   5.1  
10_01_0167 + 1876793-1877402,1877423-1877642,1877760-1879534,188...    29   5.1  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    28   6.7  
05_01_0078 - 523366-525196,525622-525675,527135-529341                 28   8.8  

>04_04_0974 + 29831274-29833184
          Length = 636

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = -1

Query: 452 DYLKVFTLPFAVHALPTRWHSSR 384
           DY ++F +PF  HA+  +W + R
Sbjct: 426 DYARMFNVPFEYHAIAAKWDTIR 448


>12_01_0073 +
           613316-613447,613611-613802,614067-614232,614460-614845
          Length = 291

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -3

Query: 483 GDLSKLISRRGLSEGVYFALCRPRSAHAMALVEVISNTYNKIHYQTNLEIKTIDDDLSFG 304
           GDL+K  S +GLS     AL     AH +     + N  N+I+ +TN+       D S  
Sbjct: 143 GDLTKSFSNKGLSATDMIAL---SGAHTIGQARCV-NFRNRIYSETNI-------DTSLA 191

Query: 303 ISLTASWPST 274
            SL ++ P+T
Sbjct: 192 TSLKSNCPNT 201


>11_01_0072 +
           570345-570476,570640-570831,571095-571260,571487-571872
          Length = 291

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = -3

Query: 483 GDLSKLISRRGLSEGVYFALCRPRSAHAMALVEVISNTYNKIHYQTNLEIKTIDDDLSFG 304
           GDL+K  S +GLS     AL     AH +     + N  N+I+ +TN+       D S  
Sbjct: 143 GDLTKSFSNKGLSATDMIAL---SGAHTIGQARCV-NFRNRIYSETNI-------DTSLA 191

Query: 303 ISLTASWPST 274
            SL ++ P+T
Sbjct: 192 TSLKSNCPNT 201


>10_01_0167 +
           1876793-1877402,1877423-1877642,1877760-1879534,
           1880019-1880199,1881313-1881529
          Length = 1000

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +1

Query: 334 YF*ICLIMYLIVSIADYLDECHRVGRAWTAKGKVN 438
           YF  CLI YL +   DY+ E + + R W A+G V+
Sbjct: 427 YFKACLI-YLCIFPEDYIIETNMLLRRWIAEGFVS 460


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -3

Query: 504  TPTKSHQGDLSKLISRRGLSEGVYFALCRP 415
            TPT+S+ GD +K+   R   + ++  LC+P
Sbjct: 2155 TPTRSNAGDATKVTLARTWYQALWATLCQP 2184


>05_01_0078 - 523366-525196,525622-525675,527135-529341
          Length = 1363

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 458  VADYLKVFTLPFAVHALPTRWHS 390
            +A+Y  +F +PF  H + +RW +
Sbjct: 1153 LAEYANMFNVPFQYHGIASRWET 1175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,972,772
Number of Sequences: 37544
Number of extensions: 329496
Number of successful extensions: 682
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 682
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)