Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0409.Seq
         (734 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_35429| Best HMM Match : Laminin_EGF (HMM E-Value=5.3e-17)           29   3.9  
SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)              28   6.8  

>SB_12473| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 387

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/45 (42%), Positives = 24/45 (53%)
 Frame = -3

Query: 552 SSASRNRYIIIDIIKFTPTKSHQGDLSKLISRRGLSEGVYFALCR 418
           S++ + R +II     TP  SH GDLS L +    S  V  ALCR
Sbjct: 2   SNSYQERDVIIACAVRTPVGSHNGDLSSLKAHELGSIVVKEALCR 46


>SB_35429| Best HMM Match : Laminin_EGF (HMM E-Value=5.3e-17)
          Length = 218

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +1

Query: 193 NQFSPSAGNDAQGQHTLTSTNPKKT-LICGRP 285
           NQFSP+   D+ G  T T+  P  T   CGRP
Sbjct: 80  NQFSPTCRIDSDGAPTCTACRPGYTGRDCGRP 111


>SB_46487| Best HMM Match : 7tm_1 (HMM E-Value=2.8026e-45)
          Length = 352

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +1

Query: 280 RPRCRQRYSKR*IIIDGLYF*ICLIMYLIVSIADY 384
           R + RQR +K  III  +Y  +C +  L++S+A Y
Sbjct: 219 RLKARQRVTKMLIIISAIYG-LCWLPNLLISVASY 252


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,436,510
Number of Sequences: 59808
Number of extensions: 398477
Number of successful extensions: 851
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)