Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0409.Seq
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.98 
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   6.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   6.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   6.9  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   9.1  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = -2

Query: 223  HHSQQMVRIGFNDVSGTIAPSTTLSRPARSTSTESNEQSQ 104
            H +Q +V    ++V+      TT+  P +  S + ++QSQ
Sbjct: 943  HSAQSVVASSASNVTNVTTNLTTILPPVKVQSQQQSQQSQ 982


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 265 FFWDLCSLM 239
           F+WDLC L+
Sbjct: 89  FYWDLCMLL 97


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 265 FFWDLCSLM 239
           F+WDLC L+
Sbjct: 89  FYWDLCMLL 97


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 265 FFWDLCSLM 239
           F+WDLC L+
Sbjct: 89  FYWDLCMLL 97


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -2

Query: 253 LCSLMYVALGHHSQQMVRI 197
           +CS+M  +L H +Q +V I
Sbjct: 145 ICSMMIESLSHTTQDLVFI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,122
Number of Sequences: 438
Number of extensions: 4071
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)