Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0409.Seq
         (734 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g16960.1 68415.m01954 importin beta-2 subunit family protein ...    28   5.6  
At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative...    27   9.8  

>At2g16960.1 68415.m01954 importin beta-2 subunit family protein
           contains weak hit to Pfam PF02985: HEAT repeat (4
           copies); contains weak hit to Pfam PF03130: PBS lyase
           HEAT-like repeat (2 copies); supported by tandem
           duplication of importin beta family protein
           (TIGR_Ath1:At2g16950) [Arabidopsis thaliana]; similar to
           Importin beta-2 subunit (Karyopherin beta-2 subunit)
           (Transportin) (M9 region interaction protein) (MIP)
           (Swiss-Prot:Q92973) [Homo sapiens]
          Length = 547

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +3

Query: 210 CWE*CPRATYINEHKSQKNTDLWTATMPSTIFQKIDHHRW-----SLFLNLFDNVSYCKY 374
           CW      TY+ E  + +N+ L+T  +    F+ +D + W      L L  F+  +  K 
Sbjct: 103 CWTLYQFGTYVFEESNLENSKLFTKVLHGFRFKLLDSNIWVQEAACLALTTFEEDAGDKL 162

Query: 375 C*LPRRVPSRGQSVDGKGQSKHLQIIRD 458
                ++  +     GK Q ++L+++ D
Sbjct: 163 VPHLEKILQQLMRAFGKYQKRNLKVLLD 190


>At3g48780.1 68416.m05327 serine C-palmitoyltransferase, putative
           similar to serine palmitoyltransferase from Solanum
           tuberosum [GI:4995890], Homo sapiens [SP|O15270], Mus
           musculus [SP|P97363]
          Length = 489

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = +1

Query: 259 KKTLICGRPRCRQRYSKR*IIIDGLYF*ICLIMYL--IVSIAD------YLDECHRVG 408
           K+ +  G+PR  + + K  ++++G+Y     I +L  IVSI        YLDE H +G
Sbjct: 225 KEQIAEGQPRTHRPWKKIIVVVEGIYSMEGEICHLPEIVSICKKYKAYVYLDEAHSIG 282


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,429
Number of Sequences: 28952
Number of extensions: 279935
Number of successful extensions: 588
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 588
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)