Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0408.Seq
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 27 2.8
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 2.8
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 3.7
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 26 4.8
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 26 4.8
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 4.8
SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3 ... 26 6.4
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 26 6.4
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 8.5
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 8.5
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.1 bits (57), Expect = 2.8
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Frame = +2
Query: 500 HERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKIS---LSIRIKPLTIEGLS 670
HE+ASK+G T S+N L + +R + K E IS L I T +G++
Sbjct: 137 HEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENIWAISEPELEAEIAWNTTQGIT 196
Query: 671 ---VDKLRQKAQELWECI 715
++ L+ + ++ EC+
Sbjct: 197 ESDLESLKDEYEKFNECL 214
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 524 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 667
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.6 bits (56), Expect = 3.7
Identities = 10/20 (50%), Positives = 17/20 (85%)
Frame = +3
Query: 441 EEKRQRLEEAEKKRQAMLQA 500
EEKR+++EE++K + +LQA
Sbjct: 138 EEKRRKIEESDKWHRVLLQA 157
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 26.2 bits (55), Expect = 4.8
Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +2
Query: 572 AQLERNKTKE-QLEEEKKISLSIRIKPLTIEGLSV-DKLRQKAQELWECI 715
A LE + E ++EE K + ++IK + EGLS+ KL K +E + I
Sbjct: 65 ALLENRRLIEAKMEEFKAVEREMKIKAFSKEGLSIASKLDPKEKEKQDTI 114
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +1
Query: 235 SDLDEQLRNTSTNGANSGPRRRMSSNALKRSR 330
SD D+Q+ +T + AN G R+ +N ++R R
Sbjct: 872 SDSDDQIPDTPSASANQGIFPRLIANLVERRR 903
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 106 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVESA 2
CW I G S L+ AL+L PA+ NV S+
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLSS 326
>SPAC24B11.10c |chr3|cfh1|chitin synthase regulatory factor Chr3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 1 PRTPHSNVAVLPVQEPV 51
PR PHS + +LP + PV
Sbjct: 357 PRYPHSQMVMLPARSPV 373
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 25.8 bits (54), Expect = 6.4
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 551 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 727
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 728 TE 733
+
Sbjct: 425 KD 426
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 8.5
Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Frame = +2
Query: 575 QLERNKTKEQLEEEKKISLSIRI---KPLTIEGLSVDKLRQKAQE 700
+L+R K ++Q E+EKK+ +I K +E L +++R + Q+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQ 141
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 8.5
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = +2
Query: 581 ERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQ-ELWE 709
E N +EQ++E+KK+S S + +++ L D L +K + E++E
Sbjct: 491 ELNNLREQIKEQKKVSESTQ---SSLQSLQRDILNEKKKHEVYE 531
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,064
Number of Sequences: 5004
Number of extensions: 30576
Number of successful extensions: 155
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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