Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0408.Seq
         (735 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0722 - 26678873-26680843                                         31   1.3  
07_03_0316 + 16684100-16684339,16684425-16685132,16685241-166859...    29   2.9  
02_03_0357 + 18075171-18077240                                         29   3.8  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    29   5.1  
09_06_0199 + 21526872-21527250,21527431-21527594,21527673-215277...    28   6.7  
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302...    28   6.7  
02_03_0365 - 18198669-18198809,18198887-18198979,18199078-181991...    28   6.7  

>11_06_0722 - 26678873-26680843
          Length = 656

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = +2

Query: 587 NKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKL 724
           NKTK+  +E+K++ LS+ +K   IE L   K  +   +L  C++ L
Sbjct: 418 NKTKKGRKEDKRVRLSMDVKKTVIETL---KKNRGLGQLGNCVISL 460


>07_03_0316 +
           16684100-16684339,16684425-16685132,16685241-16685939,
           16685992-16686053,16686096-16686368,16686622-16686873,
           16686954-16687064,16687152-16687212,16687312-16687404,
           16687482-16687667
          Length = 894

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +1

Query: 178 PKQEGEGDPEFIKRQDQKRSDLDEQLRNTSTNGANSGPRRRMSSNALKR 324
           P +EGE  P   KRQ +K+    +    T+T G+N   R   S+ A KR
Sbjct: 76  PPKEGETAPRQSKRQPKKKVPSKDDEAPTNTTGSNKSER---SAKAKKR 121


>02_03_0357 + 18075171-18077240
          Length = 689

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 5/44 (11%)
 Frame = +2

Query: 533 TIQKKSENFGLSNAQLERNKT-----KEQLEEEKKISLSIRIKP 649
           +I++K +NF L+  ++ RN+T       QL EE KIS+S  + P
Sbjct: 594 SIKEKFKNFNLAFEEIYRNQTTWKVPDPQLREELKISISENVIP 637


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = +3

Query: 447  KRQRLEEAEKKRQAMLQAMKEPARPDPTSP 536
            +RQR  E E++ ++ L+ M +P +P P +P
Sbjct: 1902 RRQRQSETERESKSNLKDMAKPKQPPPHAP 1931


>09_06_0199 +
           21526872-21527250,21527431-21527594,21527673-21527736,
           21528001-21528134,21528302-21528385,21528526-21528600,
           21528683-21528754,21528852-21528925,21529185-21529282,
           21529355-21529464,21529794-21529862,21529944-21530018,
           21530519-21530611,21530690-21530769,21530877-21530976,
           21531150-21531586,21531676-21531706,21532873-21533822,
           21533982-21534201
          Length = 1102

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = +2

Query: 500 HERASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRIK 646
           H+R  KT  N    +K  N G  + + E +  KE+   EKK  +S +IK
Sbjct: 623 HDRPEKTLKNHKKGEKKRN-GPGSGKKETHNEKEEPTSEKKQPVSAKIK 670


>06_03_1404 -
           29928792-29929040,29929147-29929551,29930130-29930280,
           29930363-29930501,29930578-29930743,29930826-29931041,
           29931142-29931323,29931412-29931538,29931974-29932112,
           29932227-29932353,29932501-29932612,29932704-29932784,
           29933330-29933483,29933569-29933689,29934003-29934045,
           29934356-29934460
          Length = 838

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 724 EFDDALPEFLGLLSEFVDGETL 659
           EFD+ LP++L  L   VD +TL
Sbjct: 456 EFDELLPKYLSFLKGLVDSDTL 477


>02_03_0365 -
           18198669-18198809,18198887-18198979,18199078-18199138,
           18199291-18199336,18199417-18199682,18199766-18200744,
           18201012-18201564,18201661-18201909,18201995-18202234
          Length = 875

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +1

Query: 178 PKQEGEGDPEFIKRQDQKR--SDLDEQLRNTS 267
           P +EGE  P   KRQ +K+  S +DE L NT+
Sbjct: 76  PPKEGETAPRRSKRQPKKKVPSQIDEVLANTT 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,171
Number of Sequences: 37544
Number of extensions: 247194
Number of successful extensions: 1036
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)